Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq628 107 2e-18 >seq628 Length=479240 Score = 107 bits (118), Expect = 2e-18 Identities = 378/582 (65%), Gaps = 60/582 (10%) Strand=Plus/Minus Query 20930 ATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGT 20989 ||||||||||| ||| || || || || |||| | |||| ||| || || ||| Sbjct 98684 ATCAACGTGGTCAGCGTAGACATGTGCATCGCCCATGACGTGCGTCAAG-CTGCCAGGGA 98626 Query 20990 C-AGGCC-CGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAAC 21047 | ||| | | || || | || |||| | |||||| || |||||||| |||||||| || Sbjct 98625 CGAGGTCACATG-CGCGGGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAAG 98567 Query 21048 GGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC---- 21103 || || ||||||||||| ||| ||||| |||||||||||| ||| ||| | ||| Sbjct 98566 GGCACGCCGAGGCCCATATCGCAGGACCGCTGGTACAGCTGACAGTGCAGGTGCCCCTTT 98507 Query 21104 ---------CCG--AGC---------------------------CACGTAAAACTGACAC 21125 ||| ||| ||||| ||||| | | Sbjct 98506 GGCTTCTCTCCGTCAGCGGGTGCACCGCGGGCTCGCGGGTAGGAGACGTAGAACTG-CGC 98448 Query 21126 AAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACAT 21184 ||| | ||| || || ||||| |||||| | |||||||||||||||||||||| | Sbjct 98447 AAACATGTGGCATGGCGGGAGGGCCATCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAG 98388 Query 21185 AACGATGCGCCGATCGTGGGGCCGCCTGTTAA----TTAGATCCACCACGTAACGCAGCT 21240 | |||||| || |||| || | | || | | ||| ||| || || |||| Sbjct 98387 GAGGATGCGGCGGTCGTACGGATTCGTCTTCAGCTTGTGGAT-GACCTCG--GCG-AGCT 98332 Query 21241 GGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTC 21300 |||| || ||||| ||| ||| | | | ||| | ||||| || ||||| |||| Sbjct 98331 GGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTC 98272 Query 21301 TCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCG 21360 ||| ||||| ||||| || || || || ||||| | ||||| | | || || || Sbjct 98271 GCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCGCGGTGCGAG-AGACCAACG 98213 Query 21361 CCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACG-CCGCGGCGCGACAG 21418 | | | | || |||| || |||| ||||||| || || ||| |||| ||| ||| Sbjct 98212 CTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCCGCCTCGC-TCAG 98154 Query 21419 TTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTC 21460 | || |||| ||| |||| || |||||||||| ||| Sbjct 98153 TGCGAGGGAGGATGTGTTGCCCTCGACGAACCACAGCAGCTC 98112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427771876105680