Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq459 176 7e-39
seq576 122 1e-22
>seq459
Length=266450
Score = 176 bits (194), Expect = 7e-39
Identities = 347/508 (68%), Gaps = 4/508 (1%)
Strand=Plus/Plus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || || ||| | ||| | ||| | || ||||||||||| ||
Sbjct 92047 CAGGGTGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCTTGGCACGCCGAT 92106
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || ||||| | || ||||||| ||| ||| || |||| || ||| | |||
Sbjct 92107 GTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGAC 92166
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || || |||||| | || || | ||||||||| | || | | ||| ||
Sbjct 92167 CTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAATGGGGAC 92226
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| || ||||||||| || | || || ||| |||| |||| ||||| ||||||
Sbjct 92227 TGGACTCTCATGTGCCCCAACGAATGCCCTGGCCTGGCCGACTGCTACGGCGAGGAGTTT 92286
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174
|||||| |||| | |||||||| |||| | || |||| | | | || |
Sbjct 92287 GAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAGACCA-TGAAGGCTC- 92344
Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233
|||| || ||| | |||||| | ||| ||| |||||||| | || | ||| ||||
Sbjct 92345 AGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTTCATGCTCT 92404
Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293
|||||||| ||| || ||||| |||||||| || | ||||| ||| ||||||
Sbjct 92405 ACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACTATCCGCAGCTCCA 92464
Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353
| || |||||||| ||| | |||||| | | || || ||| || || ||| ||||
Sbjct 92465 ACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGTCGCTGTCTGCAACCTGG 92524
Query 97354 CATCGGTCAATCTGCCCAAGTTTGTAGA 97381
| ||| || ||||||| ||||| ||
Sbjct 92525 CCTCGCTCGCCCTGCCCACCTTTGTTGA 92552
>seq576
Length=178989
Score = 122 bits (134), Expect = 1e-22
Identities = 309/467 (66%), Gaps = 31/467 (7%)
Strand=Plus/Plus
Query 125400 GACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTC 125459
|| || ||||| || | |||| | | || || || ||||||||||| ||||| ||||||
Sbjct 150764 GATGAGAAGTCCTCCTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTC 150823
Query 125460 TTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519
|| ||| || || ||||||| |||||||||||||| || || |||||||| |||
Sbjct 150824 TTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTG 150883
Query 125520 ACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTA 125579
|| | |||||| | || ||||| || ||||| || ||| ||||| ||| ||
Sbjct 150884 ACCTTCTCCAACGAGCTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTC 150943
Query 125580 CTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCAT------C 125633
|| | ||| | | | | || | | ||||| | ||||||| |
Sbjct 150944 CT------CTACTCT---CACCTCAAGAACCGCCCCAGC---AAGCAGGTCATTGAGGAC 150991
Query 125634 AACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC 125693
| ||| || |||||| || | ||| || || ||||| || ||||| | || || |
Sbjct 150992 ATCATCGT---CGATGCTGTCAAGATTGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGC 151048
Query 125694 AGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGT 125753
|| | |||||||||| ||| || ||| ||||||| |||||||| || || ||
Sbjct 151049 GCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGC 151108
Query 125754 CTACTGTACGAGTTG--ATTGGC---CGCAAGATTTACAACGCCAAGAATCCCTTTGATT 125808
|| || |||| | ||| |||| | ||||| | || |||||||| |
Sbjct 151109 CTCTTG-----GTTGCTCTCGGCAATGACAAGGTCTACAAGTCTTCCAACCCCTTTGACT 151163
Query 125809 TCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855
||||| | ||| || || | || ||||||||||| || ||||||
Sbjct 151164 TCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAG 151210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741051872777160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |