Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= NC_005261.2
Length=137821
Score E
Sequences producing significant alignments: (Bits) Value
seq347 93.3 4e-14
>seq347
Length=141978
Score = 93.3 bits (102), Expect = 4e-14
Identities = 161/229 (70%), Gaps = 10/229 (4%)
Strand=Plus/Plus
Query 99544 CGCACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCAGGCCTCCAGGCAG 99603
||||| || || | || ||||| || || ||||||||| |||||||| |||| |
Sbjct 61457 CGCACCGTCAGGCACGTATTGAGGAGGAGGACGCCGCGGTCCGCCCAGGGGGTCAGGAGG 61516
Query 99604 CCG----TGCTGCGGCCGCGGGGTCCCG---GGGAAGTTCTTCTGCACGGCCGCGTAGAT 99656
||| || || || |||||| | ||| ||| ||||| | ||| |||| ||
Sbjct 61517 CCGCCTTTGTTG-GGAGGCGGGGAGAAGTTCGGGTAGTCCTTCTTGAGGGCGACGTACAT 61575
Query 99657 GTTCTGGAGGCTGGGCGGGATCGGAA-CGCCGCGGTTCACGCTGAAGGCCAGGCCGTGGG 99715
||| | ||| |||||| ||| || | || ||| |||||| ||||||||||
Sbjct 61576 GTTTTTGAGCGAGGGCGGTGCCGGGGTCGGAG-GGCGGACGGAGAAGGCGAGGCCGTGGG 61634
Query 99716 CCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGAC 99764
|||| |||| |||||||||| || || || |||||||||||||||||
Sbjct 61635 CCTGGTTGTGGTTGTGGTAGGGATCTTGACCGAGGATGACGACCTTGAC 61683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 440894840609160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |