Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq223 123 6e-23
seq718 122 2e-22
>seq223
Length=337804
Score = 123 bits (136), Expect = 6e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | ||||| || ||||| || || |||||||| || || | ||| ||
Sbjct 245765 AAGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATC 245824
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| || || ||||| || ||||| || | ||| || || || || || || || || ||
Sbjct 245825 TTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTC 245884
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||| ||||| | || || || || | ||| || | ||| ||||| || ||||||||
Sbjct 245885 CTGGATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGT 245944
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| ||||| || || || || || ||||||||
Sbjct 245945 CTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 245977
Score = 95.1 bits (104), Expect = 3e-14
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| || || || || || || | ||||| || || || || ||
Sbjct 246009 GTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCCGTCCTCAAGCTGCTTGCCT 246068
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | | ||| || ||||| || || || || || ||||||||||||| ||
Sbjct 246069 GCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTTGACTTG 246128
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | |||||| || || ||||| || || || ||||| || ||||| ||
Sbjct 246129 ACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTC 246188
Query 104543 TTTAC 104547
|| ||
Sbjct 246189 TTGAC 246193
Score = 91.5 bits (100), Expect = 3e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||| | || || || ||||| || || || ||| | || | || ||
Sbjct 245537 AAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGGCCATC 245596
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| | || || |||||||| || || | ||| || || ||||| || || || || ||
Sbjct 245597 CTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTC 245656
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||||||| | || || || || | || || || || |||||||||||||| ||
Sbjct 245657 CTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGT 245716
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| ||||| | || || || || || |||||
Sbjct 245717 CTTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 245749
>seq718
Length=599240
Score = 122 bits (134), Expect = 2e-22
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || || | ||||| || || || ||||||
Sbjct 159982 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCA 159923
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | ||| || ||||| || || || || || ||||| ||||| | ||
Sbjct 159922 GCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 159863
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| ||| || || ||||| || || ||||||||||| || || ||
Sbjct 159862 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTTAGGGTC 159803
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 159802 TTGACGAAGATCTGCAT 159786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151386730937028
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |