Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq223 84.2 2e-11 >seq223 Length=337804 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||||| ||||| ||||| || | ||| || || || ||| ||| |||||||| Sbjct 245774 GTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTG 245833 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 |||||| | || || | | ||||| || || || ||||| || ||||| | || || Sbjct 245834 CTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTT 245893 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 | ||||||| | ||| ||||| | ||||| |||| || || || || ||||| Sbjct 245894 CGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGT 245953 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||||||||| Sbjct 245954 GAGGGTCTTGACGAAGATCTGCAT 245977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448286767520760