Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq222 136 3e-27 seq85 125 5e-24 seq711 89.7 3e-13 >seq222 Length=6087 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 5921 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5862 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 5861 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 5827 >seq85 Length=274486 Score = 125 bits (138), Expect = 5e-24 Identities = 204/294 (69%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253 |||||| ||||| || ||||| ||| | ||| | ||||| ||||||| ||||| || Sbjct 44543 GGACGCTTTCTATCGTTACAAGATGGAGAAGATCGTCACCAAGATCGAGGGCAAGGGCAA 44602 Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313 ||| || || ||||| | |||||| || || ||| || | |||| || || | Sbjct 44603 CGGCATCAAGACCGTTGTCGTCAACCTGAGCAGCGTTGCTCAGTCCCTCGCCCGTCCCGG 44662 Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 | |||| | || || ||||| | ||| || || || ||||| | |||| | | Sbjct 44663 CGCCTATGTCATCAAGTACTTCGGCTTCGAGCTCGGTGCCCAGACCAACGTTGACCCCGC 44722 Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433 |||| |||| ||| | ||||| || || ||| | ||||||||||||||| || || Sbjct 44723 CGACGACCGCTGGATCATCAACGGCTCCCACAACGCCGCCAAGCTGCAGGACCACCTCGA 44782 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 |||||| || ||||||||| || || | | ||| | ||||| |||||||| Sbjct 44783 CGGCTTCATCAACAAGTTTGTCCTCTGCAAGAAGTGCAAGAACCCCGAGACCGA 44836 >seq711 Length=808606 Score = 89.7 bits (98), Expect = 3e-13 Identities = 75/91 (82%), Gaps = 6/91 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 ||||| || |||||||||||| |||||||| ||||||||||| | || |||||||| Sbjct 498122 AAGCCTGTGCCCTTGGCTGTGATTTCGCTAAATAGTAGATAGAAGCAGTGGGAATCTCGT 498181 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATG 25987 | ||| |||| |||||||||||| |||||| Sbjct 498182 TGGTCCATTCAGGCGCGTCACTAA-TAGATG 498211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334943971004321