Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq576 114 3e-20 seq156 113 9e-20 seq459 107 4e-18 seq244 100 6e-16 seq769 87.8 4e-12 >seq576 Length=178989 Score = 114 bits (126), Expect = 3e-20 Identities = 272/406 (67%), Gaps = 10/406 (2%) Strand=Plus/Minus Query 251524 TTCATCACACCTGGACGT-TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCC 251582 ||||| ||||| || | | || || || | ||||| || ||||| || | |||||| Sbjct 151245 TTCATGACACC-GGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCC 151187 Query 251583 CTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATG 251642 |||| ||||| |||||||||||| |||||||| | | ||||| |||| || Sbjct 151186 GCCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCATT 151127 Query 251643 GCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGA 251702 ||| || || || |||| |||||| || |||||||| | ||||| |||||| | || Sbjct 151126 GCCGAGAGCAACCAAGAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGA 151067 Query 251703 GTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAAC 251762 ||||||||| | || | ||||| | ||||| | ||| |||| || | || Sbjct 151066 GTTCATGCCGAGCAGAGCGCAAGGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGAC 151007 Query 251763 TGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTG 251818 || || | | || ||| | ||||| | | | | | ||||| || | | Sbjct 151006 AGCATCGACGATGATGTCCTCAATGACCTGCTTGCTGGGGC----GGTTCTTGAGGTGAG 150951 Query 251819 AGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGG 251878 |||| ||||| | | || | ||| |||||||| || ||| ||| | |||||||| Sbjct 150950 AGTAGAGGAGGCAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGTTGG 150891 Query 251879 ACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGAT 251924 | | ||| || ||||| | ||||| ||| ||||||||||||| Sbjct 150890 AGAAGGTCAGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGAT 150845 >seq156 Length=459994 Score = 113 bits (124), Expect = 9e-20 Identities = 440/678 (65%), Gaps = 23/678 (3%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || |||||||| ||||| |||||||||||| |||| || | || ||||| || | Sbjct 275957 GTCGGCTCTCTGTCTGGTGGATGGAAGATGAAGTTGGCTCTGGCCCGTGCCATGCTCAAG 276016 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 | ||||| ||||| ||||| || || || ||||||||| |||| ||||| | ||| Sbjct 276017 GGCGCCGACGTCCTGCTGCTCGACGAACCTACCAACCACTTGGATGTTGCCAACATTGCC 276076 Query 279816 TGGCTAGTGTCCTACCT----AACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871 ||||| | | ||||||| | ||| | | ||| || | | || || ||||| Sbjct 276077 TGGCTCGAGACCTACCTCAAGACCCACCCCG-AGA---TTACCAGTTTGATCGTTTCTCA 276132 Query 279872 CGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAA 279931 ||||||||||||||| || ||| | | |||| ||||| |||| || ||| Sbjct 276133 CGACTCTGGCTTCCTCGACAACGTCACTACCGACATCTACCACTACGAGCCCAACAAGAA 276192 Query 279932 GCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGCC 279989 ||| | ||| ||||||||| | || || ||| ||||| ||||| Sbjct 276193 GCTGGCGTGCTACAAGGGCAACCTGGCCAACTT--TGTCAAGCTCCGCCCCGAGGCCAAG 276250 Query 279990 GCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTG 280049 |||||| || || || | | ||| | ||||| | || |||| ||| Sbjct 276251 AGCTACTACACGCTCTCGGCTTCCCAGGTCCAGTTCAAGTTCCC-GCCCCCGGGTATCTT 276309 Query 280050 GA-GGGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCT 280106 || || ||| || | || || ||||| | | || |||||||| Sbjct 276310 GACCGGTGTCAAGTCTTTGACCCGTGCCATCATCCGCATGACC--AACGTCTCCTACCAA 276367 Query 280107 TATCCCAATGGCCCCAA-CAT--CTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCA 280163 || ||||| | ||||| | | | | ||| |||| || ||| || || || || Sbjct 276368 TACCCCAAGGCTCCCAAGCCTTCCCTGAGCGAGGTCACCTGCCAGCTTACTCTGTCGTCC 276427 Query 280164 CGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACT 280223 | | | |||| || ||||| ||||| || ||||||||||| ||||| |||| ||| Sbjct 276428 AGAGTAGCCATCATCGGCCCCAACGGTGCTGGCAAGTCTACCCTCATCAAGATCCTTACT 276487 Query 280224 GGCGAGACCCAGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTA 280282 || ||| |||| | ||| | | | ||||||||||||| |||| || | ||| Sbjct 276488 GGTGAGGTTATTCCCAC-CACCGGTAAGGTAGAGAAGCATCCCAACCTGCGTATCGGTTA 276546 Query 280283 CGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATA 280342 | || ||||||||| || | ||| | |||| || || || | ||| || ||||| || Sbjct 276547 CATCAAGCAGCACGCTCTCGAGCACGTTGAGATGCATCTCGAGAAGACGCCCAACCAGTA 276606 Query 280343 CATTCAGTGGCGCTATGC 280360 | | |||||||| || || Sbjct 276607 CCTCCAGTGGCGTTACGC 276624 >seq459 Length=266450 Score = 107 bits (118), Expect = 4e-18 Identities = 186/268 (69%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||||| ||| |||| ||||||||||| || ||||| | | | || || | || Sbjct 93306 CTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGCACAACAGTACGCTGCGA 93247 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 ||||||||| |||||||||| |||||||| |||| | ||||| | ||||| Sbjct 93246 GATCTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGAATGTTGGGGATGTTCTG 93187 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAG 293293 ||| || || | |||||| || |||||||||| | |||||||| || |||| | Sbjct 93186 GATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAGACCCATG-T 93128 Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353 | | ||| || | || ||| ||||||||| ||||||||||||| ||| |||| Sbjct 93127 CGACGAGATCCTTCAAGAGCCAAGGGTTGACAACCTGGAACTCACCAGCAAGAACACGAC 93068 Query 293354 GGCTGTAAATGTTCGAAGTGATGGGTTC 293381 | ||| ||||| || ||| ||| || Sbjct 93067 GCTGGTAGATGTTGGAGGTGTAGGGCTC 93040 >seq244 Length=1692084 Score = 100 bits (110), Expect = 6e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| || || |||| ||||| || || || |||| ||||| ||||| ||| Sbjct 504921 GGCGAGGACCTTTGCAACTGCACCTTCTCTCTTGCCTACGGTGCCAAGATCCTGCTCAAC 504862 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| ||||||||||| | || || ||||| ||||||||| || | Sbjct 504861 CAGACTCACCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 504802 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 504801 GGCAAGTCCACTCTCATGCGCGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 504743 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || ||||| | ||| || | || ||||||||| | ||||| Sbjct 504742 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTC 504701 Score = 96.9 bits (106), Expect = 7e-15 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | || |||||| ||||||| | ||||| ||||| |||||||| || || | Sbjct 503549 CCAACTTCGGCCTGGACGCCGAGTTGGTTTCCCACTCCCGCATGCGCGGTCTGTCCGGTG 503490 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 | ||| ||||| | ||| | | || ||||| ||||||| |||||| ||||||| Sbjct 503489 GTCAGCGTGTCAAGGTCGTCCTTGCTGCCTGCTCT-TGGCAACGTCCTCACTTGATCGTC 503431 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || ||||||||||||||||| || ||||| || Sbjct 503430 CTTGACGAGCCTACCAACTACCTCGACCGTGA 503399 >seq769 Length=428798 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 132103 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 132044 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 132043 CCCACGTCGGGCTCAATTC-CCGTC 132020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027826383195231