Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq576 114 3e-20
seq156 113 9e-20
seq459 107 4e-18
seq244 100 6e-16
seq769 87.8 4e-12
>seq576
Length=178989
Score = 114 bits (126), Expect = 3e-20
Identities = 272/406 (67%), Gaps = 10/406 (2%)
Strand=Plus/Minus
Query 251524 TTCATCACACCTGGACGT-TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCC 251582
||||| ||||| || | | || || || | ||||| || ||||| || | ||||||
Sbjct 151245 TTCATGACACC-GGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCC 151187
Query 251583 CTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATG 251642
|||| ||||| |||||||||||| |||||||| | | ||||| |||| ||
Sbjct 151186 GCCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCATT 151127
Query 251643 GCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGA 251702
||| || || || |||| |||||| || |||||||| | ||||| |||||| | ||
Sbjct 151126 GCCGAGAGCAACCAAGAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGA 151067
Query 251703 GTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAAC 251762
||||||||| | || | ||||| | ||||| | ||| |||| || | ||
Sbjct 151066 GTTCATGCCGAGCAGAGCGCAAGGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGAC 151007
Query 251763 TGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTG 251818
|| || | | || ||| | ||||| | | | | | ||||| || | |
Sbjct 151006 AGCATCGACGATGATGTCCTCAATGACCTGCTTGCTGGGGC----GGTTCTTGAGGTGAG 150951
Query 251819 AGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGG 251878
|||| ||||| | | || | ||| |||||||| || ||| ||| | ||||||||
Sbjct 150950 AGTAGAGGAGGCAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGTTGG 150891
Query 251879 ACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGAT 251924
| | ||| || ||||| | ||||| ||| |||||||||||||
Sbjct 150890 AGAAGGTCAGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGAT 150845
>seq156
Length=459994
Score = 113 bits (124), Expect = 9e-20
Identities = 440/678 (65%), Gaps = 23/678 (3%)
Strand=Plus/Plus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || |||||||| ||||| |||||||||||| |||| || | || ||||| || |
Sbjct 275957 GTCGGCTCTCTGTCTGGTGGATGGAAGATGAAGTTGGCTCTGGCCCGTGCCATGCTCAAG 276016
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
| ||||| ||||| ||||| || || || ||||||||| |||| ||||| | |||
Sbjct 276017 GGCGCCGACGTCCTGCTGCTCGACGAACCTACCAACCACTTGGATGTTGCCAACATTGCC 276076
Query 279816 TGGCTAGTGTCCTACCT----AACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871
||||| | | ||||||| | ||| | | ||| || | | || || |||||
Sbjct 276077 TGGCTCGAGACCTACCTCAAGACCCACCCCG-AGA---TTACCAGTTTGATCGTTTCTCA 276132
Query 279872 CGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAA 279931
||||||||||||||| || ||| | | |||| ||||| |||| || |||
Sbjct 276133 CGACTCTGGCTTCCTCGACAACGTCACTACCGACATCTACCACTACGAGCCCAACAAGAA 276192
Query 279932 GCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGCC 279989
||| | ||| ||||||||| | || || ||| ||||| |||||
Sbjct 276193 GCTGGCGTGCTACAAGGGCAACCTGGCCAACTT--TGTCAAGCTCCGCCCCGAGGCCAAG 276250
Query 279990 GCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTG 280049
|||||| || || || | | ||| | ||||| | || |||| |||
Sbjct 276251 AGCTACTACACGCTCTCGGCTTCCCAGGTCCAGTTCAAGTTCCC-GCCCCCGGGTATCTT 276309
Query 280050 GA-GGGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCT 280106
|| || ||| || | || || ||||| | | || ||||||||
Sbjct 276310 GACCGGTGTCAAGTCTTTGACCCGTGCCATCATCCGCATGACC--AACGTCTCCTACCAA 276367
Query 280107 TATCCCAATGGCCCCAA-CAT--CTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCA 280163
|| ||||| | ||||| | | | | ||| |||| || ||| || || || ||
Sbjct 276368 TACCCCAAGGCTCCCAAGCCTTCCCTGAGCGAGGTCACCTGCCAGCTTACTCTGTCGTCC 276427
Query 280164 CGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACT 280223
| | | |||| || ||||| ||||| || ||||||||||| ||||| |||| |||
Sbjct 276428 AGAGTAGCCATCATCGGCCCCAACGGTGCTGGCAAGTCTACCCTCATCAAGATCCTTACT 276487
Query 280224 GGCGAGACCCAGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTA 280282
|| ||| |||| | ||| | | | ||||||||||||| |||| || | |||
Sbjct 276488 GGTGAGGTTATTCCCAC-CACCGGTAAGGTAGAGAAGCATCCCAACCTGCGTATCGGTTA 276546
Query 280283 CGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATA 280342
| || ||||||||| || | ||| | |||| || || || | ||| || ||||| ||
Sbjct 276547 CATCAAGCAGCACGCTCTCGAGCACGTTGAGATGCATCTCGAGAAGACGCCCAACCAGTA 276606
Query 280343 CATTCAGTGGCGCTATGC 280360
| | |||||||| || ||
Sbjct 276607 CCTCCAGTGGCGTTACGC 276624
>seq459
Length=266450
Score = 107 bits (118), Expect = 4e-18
Identities = 186/268 (69%), Gaps = 2/268 (1%)
Strand=Plus/Minus
Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174
||||| ||| |||| ||||||||||| || ||||| | | | || || | ||
Sbjct 93306 CTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGCACAACAGTACGCTGCGA 93247
Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234
||||||||| |||||||||| |||||||| |||| | ||||| | |||||
Sbjct 93246 GATCTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGAATGTTGGGGATGTTCTG 93187
Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAG 293293
||| || || | |||||| || |||||||||| | |||||||| || |||| |
Sbjct 93186 GATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAGACCCATG-T 93128
Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353
| | ||| || | || ||| ||||||||| ||||||||||||| ||| ||||
Sbjct 93127 CGACGAGATCCTTCAAGAGCCAAGGGTTGACAACCTGGAACTCACCAGCAAGAACACGAC 93068
Query 293354 GGCTGTAAATGTTCGAAGTGATGGGTTC 293381
| ||| ||||| || ||| ||| ||
Sbjct 93067 GCTGGTAGATGTTGGAGGTGTAGGGCTC 93040
>seq244
Length=1692084
Score = 100 bits (110), Expect = 6e-16
Identities = 157/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|| ||||| || || |||| ||||| || || || |||| ||||| ||||| |||
Sbjct 504921 GGCGAGGACCTTTGCAACTGCACCTTCTCTCTTGCCTACGGTGCCAAGATCCTGCTCAAC 504862
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | |||| ||||||||||| | || || ||||| ||||||||| || |
Sbjct 504861 CAGACTCACCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 504802
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| |||||| ||||||||||| |||| ||| | | ||| ||||| | |||
Sbjct 504801 GGCAAGTCCACTCTCATGCGCGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 504743
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|| ||||| | ||| || | || ||||||||| | |||||
Sbjct 504742 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTC 504701
Score = 96.9 bits (106), Expect = 7e-15
Identities = 114/152 (75%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731
|||| | || |||||| ||||||| | ||||| ||||| |||||||| || || |
Sbjct 503549 CCAACTTCGGCCTGGACGCCGAGTTGGTTTCCCACTCCCGCATGCGCGGTCTGTCCGGTG 503490
Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790
| ||| ||||| | ||| | | || ||||| ||||||| |||||| |||||||
Sbjct 503489 GTCAGCGTGTCAAGGTCGTCCTTGCTGCCTGCTCT-TGGCAACGTCCTCACTTGATCGTC 503431
Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
|| ||||||||||||||||| || ||||| ||
Sbjct 503430 CTTGACGAGCCTACCAACTACCTCGACCGTGA 503399
>seq769
Length=428798
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 132103 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 132044
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 132043 CCCACGTCGGGCTCAATTC-CCGTC 132020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027826383195231
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |