Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq459 271 9e-68 >seq459 Length=266450 Score = 271 bits (300), Expect = 9e-68 Identities = 1173/1834 (64%), Gaps = 47/1834 (3%) Strand=Plus/Minus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 ||||||||||||| || |||| | || ||||||||||| |||||||| || | Sbjct 93439 TGAACTGAATGGGAGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTCAGGC 93380 Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684 | |||||||| | | |||||| || | |||| | || || | |||| Sbjct 93379 CGAGCTTCCAGCCGGCGAAATGCATGCTGGTTATCTTGCCCATGGTCGGGTCCTTCATGT 93320 Query 113685 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCA 113744 | ||| | || || || ||||||||| ||||| || || ||||| | | | Sbjct 93319 GAATGTTGAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGCACAA 93260 Query 113745 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 113804 || | | ||| ||||| ||||| |||| ||| ||| | ||| || || | Sbjct 93259 CAGTACGCTGCGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGAATGT 93200 Query 113805 CCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTG 113861 ||| || |||||||| ||| || | | |||| | | |||||| | | | Sbjct 93199 TGGGGATGTTCTGGATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGG 93143 Query 113862 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 113921 |||| ||||| || | |||||||| || ||| |||||||| ||||||| Sbjct 93142 ACCACAGACCCATGTCGACGAGATCCTTCAAGAGCCAAGGGTTGACAACCTGGAACTCAC 93083 Query 113922 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 113981 | || || || | | | ||||| |||| ||||| |||||||||||||| ||||| | Sbjct 93082 CAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGC 93023 Query 113982 CCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 114041 ||||||| || | |||| ||| || |||||||| || | |||||| ||| |||| || Sbjct 93022 CCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACAC 92963 Query 114042 CCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 114101 | | | | |||| | ||||| | || |||||||| || | | || | | Sbjct 92962 CGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCCCAGAGATCCGAGGGCTTGACAT 92903 Query 114102 GCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATG 114161 |||||| ||| |||||||||| || || || | || || ||||| | |||| ||| | Sbjct 92902 TCCACATGTCATACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGG 92843 Query 114162 GGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 114218 ||||||| ||| |||| | | || | | |||||| ||||| || || |||| Sbjct 92842 GGCCCTCCTCCTTGGCCAGCTGCACCGACATGG---TGAGGGCAGCGTGGTAGATGGTCT 92786 Query 114219 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAA 114278 | || || || | | |||||| || || || | | ||| | Sbjct 92785 CGAAGATCTTCTTGTTGAGGTCGCGAGCCTCGGGAGACTCGAAGGGCATACGGAGAGCCA 92726 Query 114279 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 114338 || |||| || ||||| ||||||||||| || || ||||| || | ||| || | Sbjct 92725 GGAAGGCATCAGCAAGACCCTGGACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGT 92666 Query 114339 TTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 114398 | ||||| || || || || || ||||| | || || || || | | Sbjct 92665 TGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAA 92606 Query 114399 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATC-AAAACTGCGAGTCTCTTCATTG--- 114454 | |||| |||| || || ||||| | | | || | ||| | ||| | | | Sbjct 92605 CGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGACTCC----CTCGTTGTAGTCA 92550 Query 114455 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 114514 ||| | | || ||||||| || ||||| || || |||| | |||||| | | Sbjct 92549 ACAAAGGTGGGCAGGGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAG 92490 Query 114515 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 114574 ||||| ||||| ||||| || | || || || || ||||| | |||||| || || Sbjct 92489 TACTCGATAATCTCCGTGCAGAGGTTGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTG 92430 Query 114575 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 114634 ||| ||| ||||||||||| |||||| | || | || ||||| || |||| | Sbjct 92429 CTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCC 92370 Query 114635 TTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTG----GCTCGCCCCT 114689 | ||| || || | ||||| | || | | || || ||| ||| || |||| | Sbjct 92369 TCGAGGATGGCATACCAGAGCTTCTGAGCCT-TCA---TGGTCTTGCGACCCTTGCCCAT 92314 Query 114690 CCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTG 114749 || ||||||||| ||| | ||| |||||||| || || | || | || || | Sbjct 92313 -CTGCTCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAG 92255 Query 114750 GTGCCTT-ATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAG 114808 | || || | ||||| | ||||| ||| | ||| || ||| || | |||||||||| Sbjct 92254 G-GCATTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATGAAG 92196 Query 114809 AGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 114868 ||||| || |||||||| || ||| || || || |||| | || || | || || Sbjct 92195 AGGTCGGGAATCCAGAGGGCGAGGAAAAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGG 92136 Query 114869 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 114928 || ||||| ||||| ||||| | || ||| |||||||| || || ||||| | ||| Sbjct 92135 TTCTTGCGCAAATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCG 92076 Query 114929 ATTG-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAAT 114982 | | || | ||| | | ||| |||||| || || | || ||| || || Sbjct 92075 AAAGCACCGGGGCGCTT--GTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAG 92019 Query 114983 ACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTA 115042 || || ||||| || | || ||| | || || || || || |||| || Sbjct 92018 ACACGGAGCATAGGGACGACACCGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCG 91959 Query 115043 TTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCG 115102 |||| | || |||| || | |||||| || || ||| ||| ||||| ||| Sbjct 91958 GTGGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCG 91899 Query 115103 CACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAG 115162 || | |||| || | ||||| || || || ||||| |||| | ||| |||||| Sbjct 91898 CAAGTCTTGAGGGTGTCATAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAG 91839 Query 115163 CAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGAT 115221 || |||| || ||||| || ||||| ||||||||||| || || | ||||| | Sbjct 91838 CAAGAGGACAGCTG-GGCCTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGT 91780 Query 115222 GAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCG 115279 || | | |||| |||||| | |||||| || | |||| || ||| || || Sbjct 91779 GA--AGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCC 91722 Query 115280 TGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCG 115339 ||||| | | ||| ||||| | ||||| |||||| | || | | || || Sbjct 91721 CAGATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCA 91662 Query 115340 AGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 115373 ||| | ||||||| ||||||| ||||||| Sbjct 91661 AGCTTGAGGAGGTATGATCTCTCCAAAGTCTTGA 91628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597347693666280