Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq718 104 2e-17
seq576 104 2e-17
>seq718
Length=599240
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| |||| || || || | | | |||||||| || ||||||||||||
Sbjct 160012 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 159953
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||||||| || || || | | |||| || ||||| ||||| || ||
Sbjct 159952 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 159893
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || || | ||||| | | |||||||| ||||||||
Sbjct 159892 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT-CGATGGTGTCGGAAGACTCCAC 159834
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
||| | || | || ||||| || || || || || || |||||||||
Sbjct 159833 CTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATG 159785
>seq576
Length=178989
Score = 104 bits (114), Expect = 2e-17
Identities = 340/524 (65%), Gaps = 27/524 (5%)
Strand=Plus/Plus
Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGC-GACACCGC 52384
|| || ||| | ||||| ||||| | ||||| |||||||||| || | || | |
Sbjct 150716 GTTCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATT-AGCGATGAGAAGTC 150774
Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444
| | | ||| |||| | || ||||||||| || ||||| | || || |||
Sbjct 150775 CTCCTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGC 150834
Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504
||| ||| ||||||| | | || | | || | |||||||| ||||| ||| |||
Sbjct 150835 CTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAA 150894
Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTAC----- 52559
|||| |||| || || || || || || ||||| ||||| || |||||| ||||
Sbjct 150895 CGAGCTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTACTCTCA 150954
Query 52560 ----AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCT-GAGCATGTTCAAGG 52614
|||| ||| | | | | | | ||||| ||| | || ||| ||||
Sbjct 150955 CCTCAAGAACCGCCCCAGCAAGCAGGTCATTGAGGACATCATCGTCGATGCTGT-CAAG- 151012
Query 52615 AGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCA 52674
|| || ||||||| | || | || ||||| || ||||| ||||
Sbjct 151013 -----------ATTGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCA 151061
Query 52675 TGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 52734
||||| | | ||| ||||||| |||||||| || || || || ||||| |
Sbjct 151062 TGAACTCCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCTCTTGGTTGCTC 151121
Query 52735 TCGGGCA-GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCG 52793
|||| | | ||| || || ||| || ||| || ||||| || ||| | ||||| ||
Sbjct 151122 TCGGCAATGACAAGGT-CTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCC 151180
Query 52794 CTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|| | |||||||||||||| || |||||||| || | ||| ||
Sbjct 151181 CTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTA 151224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496257493205520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |