Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq576 116 4e-21 seq223 116 4e-21 seq718 109 5e-19 seq338 91.5 1e-13 >seq576 Length=178989 Score = 116 bits (128), Expect = 4e-21 Identities = 339/517 (66%), Gaps = 19/517 (4%) Strand=Plus/Plus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129 |||||| | |||| |||||||| |||||| |||||| ||| | || || ||| || Sbjct 150719 CCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAA-GTC-CT 150776 Query 47130 C--TGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCT 47187 | | ||| | ||| | | || |||||| ||| ||||| |||||||| || || Sbjct 150777 CCTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCT 150836 Query 47188 TTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACG 47247 | || | || || | | || | || |||||||||| || || || ||||| Sbjct 150837 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACG 150896 Query 47248 AGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTAC----AAC 47303 |||| ||||| | || || || || |||||| |||| ||||| ||| |||| | | Sbjct 150897 AGCTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTACTCTCACC 150956 Query 47304 ACTAGAGTCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCG 47361 | ||| || | | ||| || | | | || ||||| | | ||| || | Sbjct 150957 TCAAGAACCGCCCCAGCAAGCAGGTCAT--------TGAG-GACATCATCGTCGATGCTG 151007 Query 47362 TCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACG 47421 || |||||| |||||| | ||||||||||||| || | | || |||||| Sbjct 151008 TCAAGATTGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACT 151067 Query 47422 CGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGT 47481 | | |||||| ||||||| || ||||| ||||||||||| | ||| || Sbjct 151068 CCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCTCTTGGTTGCTCTCGGCA 151127 Query 47482 ATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGG 47541 || |||| | ||| | | || || || || || ||| | ||||| || || | | Sbjct 151128 ATGACAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCG 151187 Query 47542 GCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||||||||||| || |||||||| || | ||| || Sbjct 151188 GCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTA 151224 >seq223 Length=337804 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| || || |||||| ||| || ||||| ||||| Sbjct 245781 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTTCCG 245840 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| ||||| || || |||||||||||| ||| ||| |||| Sbjct 245841 GCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTG 245900 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | ||||| || | ||| | || ||||| || || || Sbjct 245901 ACGTTG-TCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGT 245959 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 245960 CTTGACGAAGATCTGCAT 245977 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 126910 ATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTG 126969 ||| | ||| ||||| || || || |||||||| | || ||||| ||| || | ||| Sbjct 245546 ATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGGCCATCCTCCAACTG 245605 Query 126970 TTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTT 127029 || ||||| |||| | |||||||| |||||||| ||||||||||||||| || || Sbjct 245606 CTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTT 245665 Query 127030 CTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGG 127088 | ||||| |||| || | ||||||| | |||||| || | || | ||| || || | Sbjct 245666 CGACTTGACGTTG-TCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGTCTTTCCAG 245724 Query 127089 TCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || || || ||||| ||||| Sbjct 245725 TCAAGGTCTTGACGAAAATTTGCAT 245749 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | || ||||| || ||||| ||||||||| | Sbjct 245979 CCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 246038 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| ||||||| |||||||| || || || Sbjct 246039 AGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGA 246098 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| | | || ||||| | |||| ||| || | | ||| || Sbjct 246099 ATGCCCTCCTTGTCC-TGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAAC 246157 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || | ||| | || |||||||| || || || || Sbjct 246158 CTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGAC 246193 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| ||| | Sbjct 246263 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 246322 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| ||||| ||| | |||| |||||||| || || || Sbjct 246323 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGA 246382 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| ||| || | |||||| Sbjct 246383 ATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTCGACC 246442 Query 127067 TCGACGGTCACCGTTTTGCCGGT 127089 || | ||| | || |||||||| Sbjct 246443 TCAAGGGTGATGGTCTTGCCGGT 246465 >seq718 Length=599240 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||||| || || || ||||| ||| Sbjct 160012 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 159953 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| |||||||| |||||| |||||||| || || || Sbjct 159952 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 159893 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | | ||| || Sbjct 159892 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 159833 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || || || || || || || || || ||||||||| Sbjct 159832 TCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATG 159785 >seq338 Length=273437 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| || || ||||| || || ||| ||||| Sbjct 197689 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 197630 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| ||||| || ||||||||||||||| ||| || ||||| | ||| Sbjct 197629 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 197570 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| |||||| || | ||| | || || || ||||| || || || ||| Sbjct 197569 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 197510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475496098485840