Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq338 138 1e-27
seq223 132 5e-26
seq718 131 2e-25
>seq338
Length=273437
Score = 138 bits (152), Expect = 1e-27
Identities = 139/181 (77%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||||| || ||||| |||| |||||||||||||||||||| |
Sbjct 197691 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 197632
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||||||||||||||||| || | || |||||||||| |||||| ||||| |
Sbjct 197631 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 197572
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | |||||| || || || || | || ||||| || |||||||| || || || |
Sbjct 197571 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 197512
Query 46584 A 46584
|
Sbjct 197511 A 197511
>seq223
Length=337804
Score = 132 bits (146), Expect = 5e-26
Identities = 157/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| || |||| ||| |||||| ||||| |||||||| || || ||||| | || ||
Sbjct 245769 ACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 245828
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||| |||||||| |||| |||||||||||||| || | | |||||||||| |
Sbjct 245829 AGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGG 245888
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||| ||||| ||| | | | ||||| |||||| || || | || || || ||
Sbjct 245889 ATCTTCGACTTGA-CGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTT 245947
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || || || || || ||||| |||||
Sbjct 245948 GCCAGTGAGGGTCTTGACGAAGATCTGCAT 245977
Score = 114 bits (126), Expect = 1e-20
Identities = 126/168 (75%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| || |||||||| ||||||||
Sbjct 246298 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAA 246357
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||||||| | || | || |||||||||| |||||| ||||| |
Sbjct 246358 AATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGACATT 246417
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | || ||| || || || || | |||||||| ||||| ||
Sbjct 246418 GTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 246465
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| ||||| || | || |||||| || || ||||| ||||| || || || |
Sbjct 245990 ACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCC 246049
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || ||||||||||| ||||| ||||||||||||||||| | || | || ||||||
Sbjct 246050 GTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCCTT 246109
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| ||||| ||||| | | | || || || || || || | |||||
Sbjct 246110 GTCCTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGAT 246169
Query 46558 GGTTTTGCCCGTCAGCGTTTTAAC 46581
||| ||||| || ||||| || ||
Sbjct 246170 GGTCTTGCCGGTAAGCGTCTTGAC 246193
>seq718
Length=599240
Score = 131 bits (144), Expect = 2e-25
Identities = 144/192 (75%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| ||||||||||| || || ||
Sbjct 159977 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAA 159918
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||||||| | || | || |||||||||| |||||| ||||| |
Sbjct 159917 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 159858
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| || ||||| || | ||||| || || ||||| || || || ||
Sbjct 159857 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGAC 159798
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 159797 GAAGATCTGCAT 159786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565232811205320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |