Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq576 152 5e-32
seq223 123 2e-23
seq718 118 1e-21
seq338 105 7e-18
>seq576
Length=178989
Score = 152 bits (168), Expect = 5e-32
Identities = 201/277 (73%), Gaps = 5/277 (2%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||||||||||||||| ||| || | || ||||| | ||||||||| |||||| ||
Sbjct 150607 GTAGGTGTCGATGAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAA 150548
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
||| || ||||| || |||||| ||||| || || ||| |||||||||| ||
Sbjct 150547 GCCATAGAAGCAACGGGCCTCGGGGACCTGGACCTCGCCGCTGAAGCGCTCGACCAAGTT 150488
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|| ||||| |||||||| |||||||| ||||| || | |||| |||||| |
Sbjct 150487 CTCATTGACAATGCCGTCAGAAGCGGCGAAGAAGGCGAGGATGTGCGAGATGAAGTACTT 150428
Query 133347 CTCGTTGTCGTTCA----AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402
||| | ||||| | | | | ||||||| | |||||||||||||| | |||||
Sbjct 150427 CTCATCCTCGTTGATCTTATTG-TTCCAGTCGTGGAGATCCTTGGACAGGTCAATCTCCT 150369
Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
|| ||||||| || || ||||| || || ||||||||
Sbjct 150368 CGGCGGTCCAGAAAGAGGCCTCAGCCTTCTTGTACAT 150332
>seq223
Length=337804
Score = 123 bits (136), Expect = 2e-23
Identities = 143/193 (74%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325
|||| ||||| ||||||||| | || |||||| || |||| | | | | | | ||
Sbjct 246467 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGACAATGTCAAGT 246408
Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385
||| |||| ||||| ||||| |||||| | ||||| ||||| || |||| ||| || |
Sbjct 246407 CAAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTGATTTTCGCCGGAA 246348
Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445
| ||||| || |||| |||||||| ||||||||||||||| ||||| | || || |
Sbjct 246347 AGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTC 246288
Query 38446 ATTTGGTGCTGCG 38458
| ||||| || ||
Sbjct 246287 ACTTGGTTCTCCG 246275
Score = 113 bits (124), Expect = 5e-20
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| || || ||| | || ||||| | |
Sbjct 245977 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 245918
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || |||| ||||| ||||| || ||| |||||||
Sbjct 245917 GACACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCA 245859
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || |||| ||| || || |||||||| || | |||||||| ||||||||
Sbjct 245858 GCAGCGCCTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 245799
Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446
|||||| ||||| | || |||||
Sbjct 245798 CATCCAGAAGGAGTCTACCCTGCA 245775
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 38248 AAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA 38307
|| || |||| || ||||| || ||||| ||||||||| | || || ||| | | || |
Sbjct 246201 AACTAGTCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATA 246142
Query 38308 GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGC 38367
| | | | | || ||| || | ||||| ||||| |||||| | ||||| ||||
Sbjct 246141 CCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGC 246082
Query 38368 GGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCC 38427
| | || | ||| ||||| ||||| || |||| || ||||| ||| |||||||| |
Sbjct 246081 GCTTGATCTTCGCAGGCAAGCAGCTTGAGGACGGACGGACCCTGTCCGATTACAACATTC 246022
Query 38428 AAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
| ||||| | || || || ||||||||||||
Sbjct 246021 AGAAGGAGTCCACCCTCCACTTGGTGCTGCGT 245990
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || | || || || || || || | || |||||| | |
Sbjct 245749 ATGCAAATTTTCGTCAAGACCTTGACTGGAAAGACGATTACACTAGAGGTCGAGTCTTCG 245690
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || |||| | || || || | ||||| ||||| ||||| |||||||
Sbjct 245689 GACACGATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCA 245631
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | || || || ||| |||| || | |||||| | | || |||||
Sbjct 245630 GCAGCGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACCTTGAGTGATTACAA 245571
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| ||||||| ||| | || || ||| || | || ||
Sbjct 245570 CATCCAGAAGGAGTCGACGCTTCATCTTGTCCTTCGTCTGCGTGGAGG 245523
>seq718
Length=599240
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || ||||| || || |||||| | || || ||| | ||
Sbjct 159786 ATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 159845
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| ||||| || ||| | |||||
Sbjct 159846 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 159905
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | || || || ||||| || |||| ||||||||| ||||||||||
Sbjct 159906 CAGCGCCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 159965
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || || || ||||| |||||
Sbjct 159966 ATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCG 160000
>seq338
Length=273437
Score = 105 bits (116), Expect = 7e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||| ||| | || |||||| || | |||| |
Sbjct 197511 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 197570
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || ||| ||||||| ||||| |
Sbjct 197571 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 197630
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || |||| ||||||||| ||||||||||||||| |||
Sbjct 197631 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 197690
Query 38433 G 38433
|
Sbjct 197691 G 197691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500167854541440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |