Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq649 342 7e-89
seq417 136 5e-27
seq5 132 6e-26
>seq649
Length=379898
Score = 342 bits (378), Expect = 7e-89
Identities = 727/1081 (67%), Gaps = 16/1081 (1%)
Strand=Plus/Minus
Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069
||||| | | ||||||||| ||||| | || ||||| || || ||||||||||||||
Sbjct 296772 TCACCGGACAGGATGGCGGCCTGGACGGCGGCACCGTAGGCAACGGCCTCATCGGGGTTG 296713
Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129
|| | || || | || || ||||| || || || || | | | || || |||
Sbjct 296712 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGTAGTCGGAGATGAGCTTCTGGATGCGGGGG 296653
Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189
|| || || || || ||||||| ||||| || | || | ||| || |||||||| | |
Sbjct 296652 ATACGGGTGGAACCTCCGACCAGGACGATCTCGTGGACCTGCGACTTGTCGATCTTGGCG 296593
Query 7190 TC--TC--GAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAG 7245
|| || || | | | |||| || | || ||||||| |||| |||||
Sbjct 296592 TCAGTCAGGACGCGGT----CGACGGGCTGGATGGTGGAGCGGAACAGGTCCTGGCACAG 296537
Query 7246 TTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATC 7305
||||| || || |||||||| ||||| || ||||| || | ||| ||| | | ||| ||
Sbjct 296536 CTCCTCGAAGCGCGCACGGGTGATGGAGGTGTAGAAGTCGATGCCCTCGAACAGCGAGTC 296477
Query 7306 AATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGT 7365
|| || |||| || || || | ||| || | || ||||| || ||||| || || ||
Sbjct 296476 GATCTCGATGGAGGTCTGGGCGGACGAGGACAGGGTGCGCTTGGCACGCTCGCAAGCGGT 296417
Query 7366 TCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAA 7425
|| | ||| || || || || | ||| ||| | || ||||| || || || || ||
Sbjct 296416 GCGGAGACGGCGCAGCGCGCGGGCGTTGGAGGACAGGTCCTTCTTGTGCTTGCGCTTGAA 296357
Query 7426 CTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATC 7485
||| | |||||| | ||| | ||||| || |||||||||||||| || ||
Sbjct 296356 CTCGTTGACGAAGTGGTTGACGAGGCGGTTGTCGAAGTCCTCACCACCCAAGTGGGTGTC 296297
Query 7486 CCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAA 7545
|| ||||| | ||||| || ||||| || | |||||| | | | || ||||| ||
Sbjct 296296 ACCAGCGGTGGACTTGACCTCGAAGATGCCCTCCTCAATGGTCAGGAGGGACACATCGAA 296237
Query 7546 CGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAG 7605
||||||||||| || || || ||||| ||||| ||| | || ||||| || ||
Sbjct 296236 GGTACCACCACCGAGATCGAAGATGAGAACGTTGCGCTCGCCCTCGGCCTTCTTGTCCAG 296177
Query 7606 ACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGC 7665
||||||||||| || || || || || || || || || || || ||| ||||| ||
Sbjct 296176 GCCGTACGCGATGGCGGCGGCGGTGGGCTCGTTGATGATGCGCAGCACGTTGAGGCCGGC 296117
Query 7666 AATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725
||| | || || || || || || || || || ||||| |||||||| ||||| ||
Sbjct 296116 AATGAGACCGGCGTCCTTGGTAGCCTGACGCTGGGAGTCGTTGAAGTAGGCGGGGACAGT 296057
Query 7726 TACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGT 7785
||||| |||| |||| | |||||| | | || || | || ||| |||
Sbjct 296056 GACGACGGCGTTGTTGACCTGGCCACCGAGGAAAGCCTCGGCAGTCTCGCGCATCTTGAC 295997
Query 7786 AAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAAC 7845
|| ||||| | || ||||| || | || ||| || || || || || || || ||
Sbjct 295996 CAGGACCATGGCCGAGATCTCCTCGGGCGTGAACGTCTTGGTCTCGCCCTTGAACTCGAC 295937
Query 7846 TTCAATCATGGGTTTATCCGCAGCAC-CGGGGATAACCTTATACGACCAATCTTTCATAT 7904
|| || |||| || || | | | || ||||| ||| | | ||||| |
Sbjct 295936 CTCGATGTTGGGCTT----GCCGTTCTTGTCGACCACCTTGAACGGGAAGTGCTTCATGT 295881
Query 7905 CGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTG 7964
|| | || |||| |||| ||||| | ||||| || ||||| || || || || |
Sbjct 295880 CGGCCTGCACCTCCGGGTCGTTGAACTTGCGCCCGATCAGGCGCTTGGCGTCGAACACCG 295821
Query 7965 TGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTAT 8024
|||| | |||||||| || |||||||| ||||| || ||||| ||||| ||
Sbjct 295820 TGTTGTGCGGGTTCATCGCCACCTGGTTCTTGGCCGCATCGCCGATCAGACGCTC---CG 295764
Query 8025 TTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTT 8084
| ||||| || |||||| | || || || |||| || ||||| ||||| || || ||||
Sbjct 295763 TGTCCGTGAAGGCGACGAAAGACGGTGTGGTTCTGTTTCCTTGATCGTTTGCGATGATTT 295704
Query 8085 C 8085
|
Sbjct 295703 C 295703
>seq417
Length=606808
Score = 136 bits (150), Expect = 5e-27
Identities = 342/516 (66%), Gaps = 13/516 (3%)
Strand=Plus/Plus
Query 7247 TCCTCAAAACGTGCACGGGTAAT---GGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303
||||| ||||| |||||||| || || || ||| ||| || ||| | | ||
Sbjct 23042 TCCTCGAAACGGGCACGGGTGATCTGGGTGGTGTAGTCCTCA---CCATCGAAGAGAGAG 23098
Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361
|| || |||||||| || || || || | ||| || ||||| || ||||| || |
Sbjct 23099 TCGATCTCAATGGTGGTCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAAG 23156
Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421
| || || | ||| || || ||||| |||| || || | || ||||| || || |
Sbjct 23157 CGGTACGGAGACGGCGGAGAGCACGGGGGTCGCCAGAGAGGTCCTTCTTGGTCTTGCGCT 23216
Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481
|| || | | |||| ||||| | | ||||| || | |||||||||||| |
Sbjct 23217 GGAAGTCCTTCTTGCAGTGGTCCAGGAGGTTGGTGTCGAAGTCCTGACCACCCAAGTGGG 23276
Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541
| || || || || || ||||| |||| ||| || | ||||| | | |||||||
Sbjct 23277 TGTCACCGGCAGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAAACAT 23336
Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCT 7598
| || ||||||||||||| ||| | ||||| ||||| || | | | |||
Sbjct 23337 CGAAAGTACCACCACCCAAGTCGTAGATGAGGACGTTGCGCTCCTTGCCAGACTTGCCGG 23396
Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658
| | |||||||| || || || || || || || || || || ||||| || ||| |
Sbjct 23397 CACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTGA 23456
Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718
||||||| || | | ||||| || || || || || || ||||| |||||||| |
Sbjct 23457 GGCCAGCGATGGCACCGGCATCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGCGG 23516
Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754
|||| || | || || | | || ||||| ||||
Sbjct 23517 GGACGGTGATAACAGCCTTCTCAACCTTCTTGCCGA 23552
>seq5
Length=99665
Score = 132 bits (146), Expect = 6e-26
Identities = 226/327 (69%), Gaps = 3/327 (1%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || |||||||||||||| || || || || || || ||| || || | |||
Sbjct 25364 TCGAAGTCCTCACCACCCAAGTGGGTGTCACCGGCAGTAGCCAAGACCTCGAAAACACCC 25305
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
|| ||| | || |||||||| || ||||||||||| ||||| | | || |
Sbjct 25304 TGGTCGATGGAGAGCAGGGAAACATCGAAGGTACCACCACCAAGGTCGTAGACGATGATC 25245
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
| ||| |||| | |||| || |||||||| |||||||| || || || || ||
Sbjct 25244 TGGCGCTCGCCGTC---GGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCTCG 25188
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| | ||| || || ||| || || ||||| | | ||||| || || || || ||
Sbjct 25187 TTGACAATGCGGAGGACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGGCGC 25128
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| ||||| |||||||| ||||| || || || |||| ||||| ||||| | |||
Sbjct 25127 TGGTTGTCGTTGAAGTAGGCGGGGACGGTAACAACGGCGTGGGTGACCTTCTTGCTGAGG 25068
Query 7757 TACGATTCCGCGATATCTTTCATTTTG 7783
|| | || |||| || ||||| |||
Sbjct 25067 TAGGCCTCGGCGACCTCCTTCATCTTG 25041
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635126520124440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |