Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq649 342 7e-89 seq417 136 5e-27 seq5 132 6e-26 >seq649 Length=379898 Score = 342 bits (378), Expect = 7e-89 Identities = 727/1081 (67%), Gaps = 16/1081 (1%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | ||||||||| ||||| | || ||||| || || |||||||||||||| Sbjct 296772 TCACCGGACAGGATGGCGGCCTGGACGGCGGCACCGTAGGCAACGGCCTCATCGGGGTTG 296713 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || || || || | | | || || ||| Sbjct 296712 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGTAGTCGGAGATGAGCTTCTGGATGCGGGGG 296653 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || || ||||||| ||||| || | || | ||| || |||||||| | | Sbjct 296652 ATACGGGTGGAACCTCCGACCAGGACGATCTCGTGGACCTGCGACTTGTCGATCTTGGCG 296593 Query 7190 TC--TC--GAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAG 7245 || || || | | | |||| || | || ||||||| |||| ||||| Sbjct 296592 TCAGTCAGGACGCGGT----CGACGGGCTGGATGGTGGAGCGGAACAGGTCCTGGCACAG 296537 Query 7246 TTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATC 7305 ||||| || || |||||||| ||||| || ||||| || | ||| ||| | | ||| || Sbjct 296536 CTCCTCGAAGCGCGCACGGGTGATGGAGGTGTAGAAGTCGATGCCCTCGAACAGCGAGTC 296477 Query 7306 AATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGT 7365 || || |||| || || || | ||| || | || ||||| || ||||| || || || Sbjct 296476 GATCTCGATGGAGGTCTGGGCGGACGAGGACAGGGTGCGCTTGGCACGCTCGCAAGCGGT 296417 Query 7366 TCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAA 7425 || | ||| || || || || | ||| ||| | || ||||| || || || || || Sbjct 296416 GCGGAGACGGCGCAGCGCGCGGGCGTTGGAGGACAGGTCCTTCTTGTGCTTGCGCTTGAA 296357 Query 7426 CTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATC 7485 ||| | |||||| | ||| | ||||| || |||||||||||||| || || Sbjct 296356 CTCGTTGACGAAGTGGTTGACGAGGCGGTTGTCGAAGTCCTCACCACCCAAGTGGGTGTC 296297 Query 7486 CCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAA 7545 || ||||| | ||||| || ||||| || | |||||| | | | || ||||| || Sbjct 296296 ACCAGCGGTGGACTTGACCTCGAAGATGCCCTCCTCAATGGTCAGGAGGGACACATCGAA 296237 Query 7546 CGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAG 7605 ||||||||||| || || || ||||| ||||| ||| | || ||||| || || Sbjct 296236 GGTACCACCACCGAGATCGAAGATGAGAACGTTGCGCTCGCCCTCGGCCTTCTTGTCCAG 296177 Query 7606 ACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGC 7665 ||||||||||| || || || || || || || || || || || ||| ||||| || Sbjct 296176 GCCGTACGCGATGGCGGCGGCGGTGGGCTCGTTGATGATGCGCAGCACGTTGAGGCCGGC 296117 Query 7666 AATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 ||| | || || || || || || || || || ||||| |||||||| ||||| || Sbjct 296116 AATGAGACCGGCGTCCTTGGTAGCCTGACGCTGGGAGTCGTTGAAGTAGGCGGGGACAGT 296057 Query 7726 TACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGT 7785 ||||| |||| |||| | |||||| | | || || | || ||| ||| Sbjct 296056 GACGACGGCGTTGTTGACCTGGCCACCGAGGAAAGCCTCGGCAGTCTCGCGCATCTTGAC 295997 Query 7786 AAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAAC 7845 || ||||| | || ||||| || | || ||| || || || || || || || || Sbjct 295996 CAGGACCATGGCCGAGATCTCCTCGGGCGTGAACGTCTTGGTCTCGCCCTTGAACTCGAC 295937 Query 7846 TTCAATCATGGGTTTATCCGCAGCAC-CGGGGATAACCTTATACGACCAATCTTTCATAT 7904 || || |||| || || | | | || ||||| ||| | | ||||| | Sbjct 295936 CTCGATGTTGGGCTT----GCCGTTCTTGTCGACCACCTTGAACGGGAAGTGCTTCATGT 295881 Query 7905 CGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTG 7964 || | || |||| |||| ||||| | ||||| || ||||| || || || || | Sbjct 295880 CGGCCTGCACCTCCGGGTCGTTGAACTTGCGCCCGATCAGGCGCTTGGCGTCGAACACCG 295821 Query 7965 TGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTAT 8024 |||| | |||||||| || |||||||| ||||| || ||||| ||||| || Sbjct 295820 TGTTGTGCGGGTTCATCGCCACCTGGTTCTTGGCCGCATCGCCGATCAGACGCTC---CG 295764 Query 8025 TTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTT 8084 | ||||| || |||||| | || || || |||| || ||||| ||||| || || |||| Sbjct 295763 TGTCCGTGAAGGCGACGAAAGACGGTGTGGTTCTGTTTCCTTGATCGTTTGCGATGATTT 295704 Query 8085 C 8085 | Sbjct 295703 C 295703 >seq417 Length=606808 Score = 136 bits (150), Expect = 5e-27 Identities = 342/516 (66%), Gaps = 13/516 (3%) Strand=Plus/Plus Query 7247 TCCTCAAAACGTGCACGGGTAAT---GGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 ||||| ||||| |||||||| || || || ||| ||| || ||| | | || Sbjct 23042 TCCTCGAAACGGGCACGGGTGATCTGGGTGGTGTAGTCCTCA---CCATCGAAGAGAGAG 23098 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 || || |||||||| || || || || | ||| || ||||| || ||||| || | Sbjct 23099 TCGATCTCAATGGTGGTCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAAG 23156 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | || || | ||| || || ||||| |||| || || | || ||||| || || | Sbjct 23157 CGGTACGGAGACGGCGGAGAGCACGGGGGTCGCCAGAGAGGTCCTTCTTGGTCTTGCGCT 23216 Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 || || | | |||| ||||| | | ||||| || | |||||||||||| | Sbjct 23217 GGAAGTCCTTCTTGCAGTGGTCCAGGAGGTTGGTGTCGAAGTCCTGACCACCCAAGTGGG 23276 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 | || || || || || ||||| |||| ||| || | ||||| | | ||||||| Sbjct 23277 TGTCACCGGCAGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAAACAT 23336 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCT 7598 | || ||||||||||||| ||| | ||||| ||||| || | | | ||| Sbjct 23337 CGAAAGTACCACCACCCAAGTCGTAGATGAGGACGTTGCGCTCCTTGCCAGACTTGCCGG 23396 Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 | | |||||||| || || || || || || || || || || ||||| || ||| | Sbjct 23397 CACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTGA 23456 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 ||||||| || | | ||||| || || || || || || ||||| |||||||| | Sbjct 23457 GGCCAGCGATGGCACCGGCATCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGCGG 23516 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 |||| || | || || | | || ||||| |||| Sbjct 23517 GGACGGTGATAACAGCCTTCTCAACCTTCTTGCCGA 23552 >seq5 Length=99665 Score = 132 bits (146), Expect = 6e-26 Identities = 226/327 (69%), Gaps = 3/327 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || || || || ||| || || | ||| Sbjct 25364 TCGAAGTCCTCACCACCCAAGTGGGTGTCACCGGCAGTAGCCAAGACCTCGAAAACACCC 25305 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||| | || |||||||| || ||||||||||| ||||| | | || | Sbjct 25304 TGGTCGATGGAGAGCAGGGAAACATCGAAGGTACCACCACCAAGGTCGTAGACGATGATC 25245 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | ||| |||| | |||| || |||||||| |||||||| || || || || || Sbjct 25244 TGGCGCTCGCCGTC---GGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCTCG 25188 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | ||| || || ||| || || ||||| | | ||||| || || || || || Sbjct 25187 TTGACAATGCGGAGGACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGGCGC 25128 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| ||||| || || || |||| ||||| ||||| | ||| Sbjct 25127 TGGTTGTCGTTGAAGTAGGCGGGGACGGTAACAACGGCGTGGGTGACCTTCTTGCTGAGG 25068 Query 7757 TACGATTCCGCGATATCTTTCATTTTG 7783 || | || |||| || ||||| ||| Sbjct 25067 TAGGCCTCGGCGACCTCCTTCATCTTG 25041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635126520124440