Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq459 259 6e-64 seq576 143 3e-29 >seq459 Length=266450 Score = 259 bits (286), Expect = 6e-64 Identities = 963/1495 (64%), Gaps = 31/1495 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| | |||||| || || || |||| || Sbjct 91684 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 91743 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | || || ||| || |||||| | | |||| ||||| | || || |||||| Sbjct 91744 ATCGAAACCTACAACCTGATGTCGAGCAAGTTCTTCACTCACGCCTCTCCCACACTCTTC 91803 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| ||||| || |||| ||||| ||| ||||| | | | |||||||| Sbjct 91804 AACGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGAC 91863 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || || | || || || | ||| |||| || ||| ||||| ||| ||| ||| Sbjct 91864 TCTATTGAGGGTATCTATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGGT 91923 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 || || || | || |||| || | |||| | || |||| || || || Sbjct 91924 GGCATTGGTCTCAACGTCCACCGCATCCGCGCCACCGGCTCATATATTGCCGGCACGAAC 91983 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 ||| || | ||| | | || ||||| || || || ||| ||| || ||||| || Sbjct 91984 GGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTC 92043 Query 111972 AACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 |||| | ||| ||| | | || || |||| | || |||||||| |||||| Sbjct 92044 GACCAGGGTGGCAACAAGCGCCCC---GGTGCTTTCGCCATTTACCTTGAGCCTTGGCAC 92100 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 || ||| || | || ||| | || ||||| ||||| || | ||||||| || | Sbjct 92101 GCCGATGTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCC 92160 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 || || || ||| ||| ||||||||||| || |||||||||||||| || ||| ||| | Sbjct 92161 CGTGACCTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAAT 92220 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204 || | ||| ||||| | || || || || || || || || |||| | || || Sbjct 92221 GGGGACTGGACTCTCATGTGCCCCAACGAATGC-CCTGGCCTGGCCGACTGCTACGGCGA 92279 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTG 112262 ||||||||| ||| | ||| |||||||| | ||| | | | | | || ||| || Sbjct 92280 GGAGTTTGAGGCCTTGTACGAGAAGTACGA-GCAGATGGGCAAGGGTC-GCAAGACCATG 92337 Query 112263 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321 ||| | || | | ||| | || || ||| || | || ||||||||||||| || | Sbjct 92338 AAGGCT-CAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTT 92396 Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381 ||||| ||||| || ||| |||| ||||| || || ||||| | || ||| Sbjct 92397 CATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACTATCCG 92456 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441 || ||||||||||| || || || | || | | |||||| ||||| || Sbjct 92457 CAGCTCCAACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGTCGCTGTCTG 92516 Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGATT 112500 ||||| || || |||| || |||| | ||| || | || || || | | || | Sbjct 92517 CAACCTGGCCTCGCTCGCCCTGCCCACCTTTGTTGACTACAACGAGGGAGTC-TACGACT 92575 Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560 | || |||||||| || || | || ||||| |||||| | || || Sbjct 92576 TCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTCCGCAACCTGAACAGAATCATCGACG 92635 Query 112561 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620 || ||||| ||| || ||||| || || ||| | ||||| || || |||| Sbjct 92636 TCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCCATCGGTC 92695 Query 112621 TCGGTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATTCCG 112677 |||||||||| ||||| || |||| ||| | ||| || | | || || || Sbjct 92696 TCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTATGC---CCTTCGAGTCTC 92752 Query 112678 ACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGG 112737 ||| || || |||| | || || ||||| || || ||||| || || Sbjct 92753 CCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCCCT---CA 92809 Query 112738 CGAGTTCGG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 112794 | | |||| || |||| ||| || || || || | || | |||||||| || | Sbjct 92810 CCATGTCGGTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCTG 92869 Query 112795 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACT 112854 ||| || || | || || | ||| |||||| | | || || | || || |||| Sbjct 92870 TTTCTCAGGGCATCCTCCAGTATGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGACT 92929 Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 112914 |||| ||| | ||||| | || ||| || | ||| | || ||| |||| | | || | Sbjct 92930 GGGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCGC 92989 Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974 | ||||| || ||| |||| | || |||||||| || || || |||||||| ||||||| Sbjct 92990 CCATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTACA 93049 Query 112975 CGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATC 113034 | | |||||||| | | | | || || || ||||| | |||||||| | Sbjct 93050 CCTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAACCCTTGGC 93109 Query 113035 TCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 113089 || || | || ||| || || ||||| |||||| | | |||||| | | ||| Sbjct 93110 TCTTGAAGGATCTCGTCGACATGGGTCTGTGGTCCGATGCCATGAAGAACCGCAT 93164 >seq576 Length=178989 Score = 143 bits (158), Expect = 3e-29 Identities = 168/225 (75%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT--- 102155 |||||| |||||||| || || | ||||| || || ||||| |||||||| || Sbjct 150707 GCCATC---ACAGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGC 150763 Query 102156 GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATC 102215 ||| ||||| ||||| || |||| ||| | || || || |||||||||||| Sbjct 150764 GATGAGAAGTCC---TCCTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATC 150820 Query 102216 TTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGT 102275 |||||| ||| ||||| | | || | |||||||||||||| ||||| ||||| ||| Sbjct 150821 TTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGT 150880 Query 102276 CTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || ||||||||||||||| ||||||||||| ||||| || ||| Sbjct 150881 CTGACCTTCTCCAACGAGCTGATCTCTCGTGATGAGGGTCTTCAC 150925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620736262409520