Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq223 165 2e-35
seq718 131 4e-25
seq338 107 4e-18
seq459 95.1 3e-14
>seq223
Length=337804
Score = 165 bits (182), Expect = 2e-35
Identities = 164/210 (78%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990
||||| ||||| || ||||| || || || |||||||| |||| || | ||||| ||
Sbjct 245541 ACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAAG-GTGCGGCCATCCTC 245599
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
| ||||||||| || |||||||| || || ||||| ||||||||||| || ||||| ||
Sbjct 245600 CAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTG 245659
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||||||||| ||||| ||||||||| || || || || |||| ||||||
Sbjct 245660 AATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGTCTT 245719
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| ||||| || || ||||| | ||||||
Sbjct 245720 TCCAGTCAAGGTCTTGACGAAAATTTGCAT 245749
Score = 134 bits (148), Expect = 3e-26
Identities = 146/194 (75%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || |||||||| || ||||| |||||||||| || || | || || || |||||
Sbjct 246002 GTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCCGTCCTCAAGCTG 246061
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| ||||||||||| | || || ||||| || |||||||| || ||||| ||||| ||
Sbjct 246062 CTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTT 246121
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| |||||| || || ||||| || ||| || || |||||||| | ||||| || ||
Sbjct 246122 TGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTGCCGGT 246181
Query 195117 CAAAGTTTTTACGA 195130
| || || ||||
Sbjct 246182 AAGCGTCTTGACGA 246195
>seq718
Length=599240
Score = 131 bits (144), Expect = 4e-25
Identities = 159/217 (73%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||| |||||||| || || || ||||| |||| || || | || || ||||||||
Sbjct 159989 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTG 159930
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || || ||||| || || || ||||| || || ||||| || ||||| || || ||
Sbjct 159929 CTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 159870
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| || || |||||||| ||| ||||| |||||||| | ||||| || ||
Sbjct 159869 GGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGT 159810
Query 195117 CAAAGTTTTTACGAACACTTGCATTTATGGTTACTTG 195153
| || || ||||| | ||||| || ||||||
Sbjct 159809 TAGGGTCTTGACGAAGATCTGCATGATTGCCTACTTG 159773
>seq338
Length=273437
Score = 107 bits (118), Expect = 4e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| |||| || || | || || ||||||||||| || ||||||||
Sbjct 197689 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 197630
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
| || || ||||| || || ||||| || ||||| || || || |||||| || ||
Sbjct 197629 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 197570
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
|| |||||||| || || |||||||||| ||||| || |||| || || |||||
Sbjct 197569 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 197511
>seq459
Length=266450
Score = 95.1 bits (104), Expect = 3e-14
Identities = 191/281 (68%), Gaps = 2/281 (1%)
Strand=Plus/Plus
Query 160587 TTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATT 160646
||||| |||| |||||| | |||| || ||||||||||| ||| | | |||||||| |
Sbjct 92168 TTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAATGGGGACT 92227
Query 160647 GGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCG 160706
||| || | || ||||| ||| ||||| || | || || || ||||| |
Sbjct 92228 GGACTCTCATGTGCCCCAACGAATGCCCTGGCCTGGCCGACTGCTACGGCGAGGAGTTTG 92287
Query 160707 AGACTCTTTATGAAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAA 160765
|| | | || || | ||||| | ||| ||| | | || | | ||||||| ||
Sbjct 92288 AGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAA-GACCATGAAGGCTCAG 92346
Query 160766 GAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATAC 160825
| || ||| || |||||| | ||||| |||| |||| ||||| || |||
Sbjct 92347 AAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTTCATGCTCTAC 92406
Query 160826 AAGGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGG 160866
||||||||| | |||||||| |||||||||||| ||||
Sbjct 92407 AAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGG 92447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109470355750697
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |