Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq223 98.7 6e-16
seq718 95.1 8e-15
>seq223
Length=337804
Score = 98.7 bits (108), Expect = 6e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || ||| | || |||| |||||||| |||||||| ||
Sbjct 245787 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAA 245846
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| | || | ||||||||||| |||||| ||||||
Sbjct 245847 ATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTG 245906
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | || || || | ||| || || || || ||||| ||||| ||
Sbjct 245907 TCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACG 245966
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 245967 AAGATCTGCATA 245978
>seq718
Length=599240
Score = 95.1 bits (104), Expect = 8e-15
Identities = 150/213 (70%), Gaps = 8/213 (4%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||||| ||| || ||||| ||||| ||||| || ||| | || | || ||
Sbjct 159994 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 159935
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| ||||| ||||| || || || |||||||| | || | |||||||||||
Sbjct 159934 AGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 159875
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| ||||| || | ||||| || | ||| || || | ||| || ||
Sbjct 159874 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGT 159819
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| ||||| || ||||| || |||||||||||
Sbjct 159818 CTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 159786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324630470430648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |