Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq48 134 4e-26
seq576 95.1 4e-14
seq669 91.5 4e-13
seq373 86.0 2e-11
>seq48
Length=60367
Score = 134 bits (148), Expect = 4e-26
Identities = 191/264 (72%), Gaps = 6/264 (2%)
Strand=Plus/Minus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| | ||||||||| || ||||||||| | || || ||||| ||||| || |
Sbjct 52468 CTTGACGAGACGACGCTGGATGTAACCAGTTTCGGCAGTCTTGACAGCAGTATCGATCAA 52409
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701
||| | |||||| |||| ||||||||||| | || | || ||| || || | |
Sbjct 52408 ACCCTCTCGACCAGCCATGGCATGGAAGAAGAATTC-ACTGGGCGTAAGACCACGGAGGT 52350
Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761
||||| |||||||||| || || |||||||| || | |||| |||||| || || || |
Sbjct 52349 AGGAGTTCTCAACGAAGCCGCGAGCCTCGGGAGAGTAGTCGTCCTTGGTGAAATGCGGGA 52290
Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821
| || | | || ||||| | || |||||||| || || ||| |||||||||| | |
Sbjct 52289 GAGTGCGATACTTGAAGCCGAAGGGAATACGCTTACCCTCGACGATCTGCTGTCC--GAC 52232
Query 302822 ACGA--AATCATCTGCGAAATATT 302843
| || | ||||||| ||||| ||
Sbjct 52231 AAGAGCAGTCATCTGGGAAATGTT 52208
>seq576
Length=178989
Score = 95.1 bits (104), Expect = 4e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 133508 CGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATT 133567
||||||||||| || || | || ||||| || || ||||| ||||| ||| ||| ||
Sbjct 150788 CGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATC 150847
Query 133568 TTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCA 133627
|| ||||| || ||||||||| || | || || ||| || || ||||| || || ||
Sbjct 150848 TTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCT 150907
Query 133628 AGGGACGAGGCACTTCACACCGAATTTGCC 133657
| || |||| ||||||||||| || |||
Sbjct 150908 CGTGATGAGGGTCTTCACACCGACTTCGCC 150937
>seq669
Length=39557
Score = 91.5 bits (100), Expect = 4e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|||||||| | |||||| |||||||||||||| ||||||||||| |||||||| || ||
Sbjct 12882 GCACCGTGGGCAATCATGCAATCACGCTCCATCTCACCGAAACGCAGACCACCGTCACGG 12823
Query 251545 GCCCTACCCTCGGCAGGCTG 251564
|| | ||||||| | |||||
Sbjct 12822 GCACGACCCTCGACGGGCTG 12803
>seq373
Length=340199
Score = 86.0 bits (94), Expect = 2e-11
Identities = 118/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 251497 ATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCG 251556
|||| |||||| |||||||| || || |||||||||||||| ||||| | | ||| ||
Sbjct 72801 ATCAAACAATCGCGCTCCATCTCGCCCAAACGAAGACCACCGTCGCGGGATCGACCTTCC 72742
Query 251557 GCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATTT 251616
| ||||| || |||||| | || | ||||| ||| || || ||| || |
Sbjct 72741 GTCGGCTGGCGGGTGAGAATGGCCCTGGGACCCCGGGAACGAGAGTGCATCTTGTCCTGA 72682
Query 251617 ACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATG 251661
||||| ||||| || |||||||| | ||| ||| |||| |||
Sbjct 72681 ACCATGTGCTTCAGGCGCTGGTAATAGATGGGCCCGTTGAAAATG 72637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471802683588567
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |