Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq43 152 8e-31
seq339 113 7e-19
seq576 111 2e-18
seq459 96.9 5e-14
seq688 86.0 1e-10
>seq43
Length=854588
Score = 152 bits (168), Expect = 8e-31
Identities = 99/109 (91%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| |||||||||||||||||||||||||||||||| | || ||||||||||| ||||||
Sbjct 292867 GCCTCCAACTACCTCGACATCAAGCCCCTCCTCGATGTTGGTTGCAAGACCGTTGCCAAC 292926
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
| |||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 292927 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACCTTCAACATCA 292975
>seq339
Length=993518
Score = 113 bits (124), Expect = 7e-19
Identities = 203/295 (69%), Gaps = 4/295 (1%)
Strand=Plus/Minus
Query 2019147 GACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAA--TCGACCTGCCGCCCG 2019204
|||||||| |||| |||||| | ||| | | ||||| || |||||| | |
Sbjct 855876 GACGTCGTCCGTAACCGCATCAAAGGTTTCGC--CCAGAAGAAGGTCACCCTGCCCCAGG 855819
Query 2019205 GCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGG 2019264
||||||||||| || | || |||||||| |||||| | | || || | ||||| || |
Sbjct 855818 GCCGCCACAAGCTGGTGATTCTCGATGAAGCCGACAGTATGACATCAGGCGCCCAACAAG 855759
Query 2019265 CCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACA 2019324
| ||||| || ||||| | ||| ||||||| ||||| || || | ||||||||
Sbjct 855758 CTCTCCGCCGAACGATGGAGATTTACTCCAACACTACGCGCTTCGCCTTCGCCTGCAATC 855699
Query 2019325 CGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCC 2019384
||| | | ||||||| | || ||| || ||||||||| | || | || || |
Sbjct 855698 AGTCCAACAAGATCATCGAGCCGCTGCAGTCGCGATGCGCCATCCTCCGGTACGCCCGGC 855639
Query 2019385 TCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439
||||||||| ||| | | | ||| ||| |||| ||||| || || |||||
Sbjct 855638 TCACCGACGAGCAGGTGGTCAAGCGGCTGTTGCAGATCATCGAAGCGGAGAAGGT 855584
>seq576
Length=178989
Score = 111 bits (122), Expect = 2e-18
Identities = 179/253 (71%), Gaps = 6/253 (2%)
Strand=Plus/Minus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || ||| | || ||| ||| || |||||||||||||| | |
Sbjct 151241 TGACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCA 151182
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| ||||| |||||| | || ||||||| | | |||| ||| || ||||
Sbjct 151181 GGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCATTGCCGA 151122
Query 794011 GCG-ACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069
| | | |||| ||||||||||| || || ||||||||||| ||| ||| || ||||
Sbjct 151121 GAGCAACCAAG-AGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTC 151063
Query 794070 ATGCCGA--TGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGG 794127
||||||| |||||| | ||||| | |||| | | ||||| | ||| |||| ||| |
Sbjct 151062 ATGCCGAGCAGAGCGCAA--GGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGACAG 151005
Query 794128 CCTCGATGATGAT 794140
| |||| ||||||
Sbjct 151004 CATCGACGATGAT 150992
Score = 105 bits (116), Expect = 1e-16
Identities = 97/120 (81%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 794548 GTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606
||||| |||||| ||||||| || | || | | || ||||||| ||||||||||||
Sbjct 150654 GTGTCAATGGCGTTGAAGAGGTACGTGCG-CTGGGCAGGCTCCTTGATGTAGGTGTCGAT 150596
Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
||| |||||||||||||| ||||||||||| || || ||| ||||||||||| |||||
Sbjct 150595 GAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAAGCCATAGAAGCA 150536
Score = 95.1 bits (104), Expect = 2e-13
Identities = 138/194 (71%), Gaps = 7/194 (4%)
Strand=Plus/Minus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| || || ||| ||||| |||||| ||| || |||||||| || || |||||
Sbjct 150919 ACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAGACCACGCTT 150860
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||||||||| ||||||| ||| || ||| ||||| ||||| |||||||| ||
Sbjct 150859 CTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCGAA 150800
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCC--CTCTTTGTTGATCCACTTCATCGCC 794517
| | ||||| |||| ||| || | ||| | ||| | | | |||||||||| |||
Sbjct 150799 GGCAACGAGACGCTGGGCGAAGG-----AGGACTTCTCATCGCTAATCCACTTCAGGGCC 150745
Query 794518 CACTCTGCCTTTTT 794531
|| || ||||| ||
Sbjct 150744 CAGTCGGCCTTCTT 150731
>seq459
Length=266450
Score = 96.9 bits (106), Expect = 5e-14
Identities = 262/404 (65%), Gaps = 6/404 (1%)
Strand=Plus/Minus
Query 2071612 GTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGC 2071671
||||| ||||||| ||||||||| | ||||| |||| ||||||| |||||| ||||
Sbjct 92450 GTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGG 92391
Query 2071672 GCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAG 2071731
||| |||||| |||| ||| || |||||| |||| | | | || || |
Sbjct 92390 TTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGAGCCTTCAT---G 92334
Query 2071732 GTCCT-CGCGCG--GCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCG 2071788
||| | || | |||| | | ||| ||||| | |||||
Sbjct 92333 GTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCG 92274
Query 2071789 TGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTC 2071848
| ||| ||| |||||| || ||| ||||| | ||| | |||||| || ||
Sbjct 92273 TAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTC 92214
Query 2071849 ACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGG 2071908
|||| | ||| || |||||| |||| ||| || || || || || || ||
Sbjct 92213 TCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGGTCACGGGCGCGA 92154
Query 2071909 TTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCAC 2071968
||||||||||||||||||||| || || | |||||| || |||||||||||
Sbjct 92153 ACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACATCGGCGTGCCAA 92094
Query 2071969 GGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012
||||| ||||| ||| || || || ||||||| ||| ||
Sbjct 92093 GGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACC 92050
Score = 86.0 bits (94), Expect = 1e-10
Identities = 350/543 (64%), Gaps = 24/543 (4%)
Strand=Plus/Minus
Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310
||||||||||| ||||| |||| || |||| | | |||||||| |||||||||||
Sbjct 93449 TGGTCGACGGTGAACTGAATGGGAGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCC 93390
Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGC-AT--TC 2069367
||||| |||||| | ||| || | ||||| || || || | | || ||
Sbjct 93389 GTCTTCAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTGGTTAT---CTTGCCCATGGTC 93333
Query 2069368 GGGACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427
||| | || | |||||||||||| |||||||| ||| | ||||||||
Sbjct 93332 GGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCA 93273
Query 2069428 GCCATGT---CGATGGTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTG 2069484
||||| | | | || |||| | || | |||||| || |||||| |||||||||||
Sbjct 93272 GCCATCTGCACAACAGT-ACGCTGC--GAGATCTCCCAAACAGTCTTGTACAGGGCCTTG 93216
Query 2069485 AGATGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGG 2069544
| | | || | | | | | | ||| | || || | | | || |||| |
Sbjct 93215 ACCTCAGTAGGAATGTTGGGG------ATGTTCTGGATGGAACCGTTCTCGGCAATGATG 93162
Query 2069545 CGGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGC-- 2069602
|||| | | | | |||||| || | | | | | | || || | | |
Sbjct 93161 CGGTTCTTCATGGCATCGGACCACAGACC-CATGTCGAC--GAGATCCTTCAAGAGCCAA 93105
Query 2069603 -GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATG 2069661
||||||| || || || || | || || || ||| |||||||||| ||| |
Sbjct 93104 GGGTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAG 93045
Query 2069662 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 2069721
||| | |||| ||||||||| ||||||||| || |||| || |||||| ||||
Sbjct 93044 GGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCG 92985
Query 2069722 ACGAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCC 2069781
||||| || |||||||| | |||| ||| | | || || || || |||||||||
Sbjct 92984 ACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCC 92925
Query 2069782 CAG 2069784
|||
Sbjct 92924 CAG 92922
>seq688
Length=1073214
Score = 86.0 bits (94), Expect = 1e-10
Identities = 138/196 (70%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 2411772 GAGCATGGCCTTGATGGCAAACTCGTACCAGC-GGCACCGGTGCTCGACGAGGTCCCACG 2411830
||| ||| || ||||||| |||| ||| | ||||| | ||||||||||| || ||
Sbjct 864724 GAGGATGCCCGTGATGGCGAACTTGTAAAACTTGGCAC-GCTGCTCGACGAGCTCGATCG 864782
Query 2411831 GCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACATC 2411890
| | |||| ||||||||| | |||| | |||||||| ||||| ||| | || |
Sbjct 864783 GGGCCTTGAGGTTGTCGAGGAAGCCGTGGATGTCGGCAAGGAGGACGGTCAGCTCGCAGC 864842
Query 2411891 CGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCCCAGATGGGGCTTGC 2411950
|||| ||| || | || || || | | |||||| |||||||| ||| || |||
Sbjct 864843 CGGCGGCGAGGAACTGAGCTAGCTTGATGGCGGGCACGAAGTAGCCGCAATGCGGTCTGC 864902
Query 2411951 CCGTCGGCGCGGTGCC 2411966
|||| | |||||| ||
Sbjct 864903 CCGTTGTCGCGGTTCC 864918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916162257722249
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |