Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq43 152 8e-31 seq339 113 7e-19 seq576 111 2e-18 seq459 96.9 5e-14 seq688 86.0 1e-10 >seq43 Length=854588 Score = 152 bits (168), Expect = 8e-31 Identities = 99/109 (91%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||||||||||||||||||||||||||||||| | || ||||||||||| |||||| Sbjct 292867 GCCTCCAACTACCTCGACATCAAGCCCCTCCTCGATGTTGGTTGCAAGACCGTTGCCAAC 292926 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 292927 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACCTTCAACATCA 292975 >seq339 Length=993518 Score = 113 bits (124), Expect = 7e-19 Identities = 203/295 (69%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 2019147 GACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAA--TCGACCTGCCGCCCG 2019204 |||||||| |||| |||||| | ||| | | ||||| || |||||| | | Sbjct 855876 GACGTCGTCCGTAACCGCATCAAAGGTTTCGC--CCAGAAGAAGGTCACCCTGCCCCAGG 855819 Query 2019205 GCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGG 2019264 ||||||||||| || | || |||||||| |||||| | | || || | ||||| || | Sbjct 855818 GCCGCCACAAGCTGGTGATTCTCGATGAAGCCGACAGTATGACATCAGGCGCCCAACAAG 855759 Query 2019265 CCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACA 2019324 | ||||| || ||||| | ||| ||||||| ||||| || || | |||||||| Sbjct 855758 CTCTCCGCCGAACGATGGAGATTTACTCCAACACTACGCGCTTCGCCTTCGCCTGCAATC 855699 Query 2019325 CGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCC 2019384 ||| | | ||||||| | || ||| || ||||||||| | || | || || | Sbjct 855698 AGTCCAACAAGATCATCGAGCCGCTGCAGTCGCGATGCGCCATCCTCCGGTACGCCCGGC 855639 Query 2019385 TCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439 ||||||||| ||| | | | ||| ||| |||| ||||| || || ||||| Sbjct 855638 TCACCGACGAGCAGGTGGTCAAGCGGCTGTTGCAGATCATCGAAGCGGAGAAGGT 855584 >seq576 Length=178989 Score = 111 bits (122), Expect = 2e-18 Identities = 179/253 (71%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||| | || ||| ||| || |||||||||||||| | | Sbjct 151241 TGACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCA 151182 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | || ||||||| | | |||| ||| || |||| Sbjct 151181 GGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCATTGCCGA 151122 Query 794011 GCG-ACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 | | | |||| ||||||||||| || || ||||||||||| ||| ||| || |||| Sbjct 151121 GAGCAACCAAG-AGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTC 151063 Query 794070 ATGCCGA--TGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGG 794127 ||||||| |||||| | ||||| | |||| | | ||||| | ||| |||| ||| | Sbjct 151062 ATGCCGAGCAGAGCGCAA--GGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGACAG 151005 Query 794128 CCTCGATGATGAT 794140 | |||| |||||| Sbjct 151004 CATCGACGATGAT 150992 Score = 105 bits (116), Expect = 1e-16 Identities = 97/120 (81%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 794548 GTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606 ||||| |||||| ||||||| || | || | | || ||||||| |||||||||||| Sbjct 150654 GTGTCAATGGCGTTGAAGAGGTACGTGCG-CTGGGCAGGCTCCTTGATGTAGGTGTCGAT 150596 Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| |||||||||||||| ||||||||||| || || ||| ||||||||||| ||||| Sbjct 150595 GAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAAGCCATAGAAGCA 150536 Score = 95.1 bits (104), Expect = 2e-13 Identities = 138/194 (71%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| || || ||| ||||| |||||| ||| || |||||||| || || ||||| Sbjct 150919 ACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAGACCACGCTT 150860 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| ||| || ||| ||||| ||||| |||||||| || Sbjct 150859 CTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCGAA 150800 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCC--CTCTTTGTTGATCCACTTCATCGCC 794517 | | ||||| |||| ||| || | ||| | ||| | | | |||||||||| ||| Sbjct 150799 GGCAACGAGACGCTGGGCGAAGG-----AGGACTTCTCATCGCTAATCCACTTCAGGGCC 150745 Query 794518 CACTCTGCCTTTTT 794531 || || ||||| || Sbjct 150744 CAGTCGGCCTTCTT 150731 >seq459 Length=266450 Score = 96.9 bits (106), Expect = 5e-14 Identities = 262/404 (65%), Gaps = 6/404 (1%) Strand=Plus/Minus Query 2071612 GTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGC 2071671 ||||| ||||||| ||||||||| | ||||| |||| ||||||| |||||| |||| Sbjct 92450 GTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGG 92391 Query 2071672 GCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAG 2071731 ||| |||||| |||| ||| || |||||| |||| | | | || || | Sbjct 92390 TTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGAGCCTTCAT---G 92334 Query 2071732 GTCCT-CGCGCG--GCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCG 2071788 ||| | || | |||| | | ||| ||||| | ||||| Sbjct 92333 GTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCG 92274 Query 2071789 TGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTC 2071848 | ||| ||| |||||| || ||| ||||| | ||| | |||||| || || Sbjct 92273 TAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTC 92214 Query 2071849 ACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGG 2071908 |||| | ||| || |||||| |||| ||| || || || || || || || Sbjct 92213 TCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGGTCACGGGCGCGA 92154 Query 2071909 TTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCAC 2071968 ||||||||||||||||||||| || || | |||||| || ||||||||||| Sbjct 92153 ACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACATCGGCGTGCCAA 92094 Query 2071969 GGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||| ||||| ||| || || || ||||||| ||| || Sbjct 92093 GGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACC 92050 Score = 86.0 bits (94), Expect = 1e-10 Identities = 350/543 (64%), Gaps = 24/543 (4%) Strand=Plus/Minus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||||||||| ||||| |||| || |||| | | |||||||| ||||||||||| Sbjct 93449 TGGTCGACGGTGAACTGAATGGGAGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCC 93390 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGC-AT--TC 2069367 ||||| |||||| | ||| || | ||||| || || || | | || || Sbjct 93389 GTCTTCAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTGGTTAT---CTTGCCCATGGTC 93333 Query 2069368 GGGACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 ||| | || | |||||||||||| |||||||| ||| | |||||||| Sbjct 93332 GGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCA 93273 Query 2069428 GCCATGT---CGATGGTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTG 2069484 ||||| | | | || |||| | || | |||||| || |||||| ||||||||||| Sbjct 93272 GCCATCTGCACAACAGT-ACGCTGC--GAGATCTCCCAAACAGTCTTGTACAGGGCCTTG 93216 Query 2069485 AGATGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGG 2069544 | | | || | | | | | | ||| | || || | | | || |||| | Sbjct 93215 ACCTCAGTAGGAATGTTGGGG------ATGTTCTGGATGGAACCGTTCTCGGCAATGATG 93162 Query 2069545 CGGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGC-- 2069602 |||| | | | | |||||| || | | | | | | || || | | | Sbjct 93161 CGGTTCTTCATGGCATCGGACCACAGACC-CATGTCGAC--GAGATCCTTCAAGAGCCAA 93105 Query 2069603 -GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATG 2069661 ||||||| || || || || | || || || ||| |||||||||| ||| | Sbjct 93104 GGGTTGACAACCTGGAACTCACCAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAG 93045 Query 2069662 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 2069721 ||| | |||| ||||||||| ||||||||| || |||| || |||||| |||| Sbjct 93044 GGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCG 92985 Query 2069722 ACGAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCC 2069781 ||||| || |||||||| | |||| ||| | | || || || || ||||||||| Sbjct 92984 ACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCC 92925 Query 2069782 CAG 2069784 ||| Sbjct 92924 CAG 92922 >seq688 Length=1073214 Score = 86.0 bits (94), Expect = 1e-10 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 2411772 GAGCATGGCCTTGATGGCAAACTCGTACCAGC-GGCACCGGTGCTCGACGAGGTCCCACG 2411830 ||| ||| || ||||||| |||| ||| | ||||| | ||||||||||| || || Sbjct 864724 GAGGATGCCCGTGATGGCGAACTTGTAAAACTTGGCAC-GCTGCTCGACGAGCTCGATCG 864782 Query 2411831 GCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACATC 2411890 | | |||| ||||||||| | |||| | |||||||| ||||| ||| | || | Sbjct 864783 GGGCCTTGAGGTTGTCGAGGAAGCCGTGGATGTCGGCAAGGAGGACGGTCAGCTCGCAGC 864842 Query 2411891 CGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCCCAGATGGGGCTTGC 2411950 |||| ||| || | || || || | | |||||| |||||||| ||| || ||| Sbjct 864843 CGGCGGCGAGGAACTGAGCTAGCTTGATGGCGGGCACGAAGTAGCCGCAATGCGGTCTGC 864902 Query 2411951 CCGTCGGCGCGGTGCC 2411966 |||| | |||||| || Sbjct 864903 CCGTTGTCGCGGTTCC 864918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916162257722249