Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq718 109 4e-19
seq223 82.4 5e-11
>seq718
Length=599240
Score = 109 bits (120), Expect = 4e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || || | ||||| || || ||| ||| || || |||||||| |||||
Sbjct 160013 ACCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 159954
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||| ||||| |||| || | || ||||| ||||| |||| |||||||| || | ||
Sbjct 159953 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGG 159894
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| || || ||||| || || || | ||| ||| | ||||||| || ||||
Sbjct 159893 GATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CATTGTCGATGGTGTCGGAAGACTCCA 159835
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| |||| ||||| || ||||| |||| || || || |||||||||||
Sbjct 159834 CCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 159786
>seq223
Length=337804
Score = 82.4 bits (90), Expect = 5e-11
Identities = 136/194 (70%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617
||| || || |||||||| || || || ||||| | || |||| || |||||||| ||
Sbjct 245786 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAA 245845
Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677
||||| |||||||| || | || | ||| || ||||| || ||| || | | |
Sbjct 245846 AATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 245904
Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736
||| | |||||| ||||| || |||| || || || || || || | || || |
Sbjct 245905 TGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGA 245964
Query 33737 CAAAGATCTGCATA 33750
| ||||||||||||
Sbjct 245965 CGAAGATCTGCATA 245978
Score = 82.4 bits (90), Expect = 5e-11
Identities = 150/217 (69%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | |||||| || || ||| ||| || || ||||||||||||||
Sbjct 245978 ACCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGA 246037
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || ||| |||| || | || || || || || ||||| |||||||| || | ||
Sbjct 246038 CAGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGG 246097
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| || || ||||| ||| || || | |||| ||| | ||| || || || |
Sbjct 246098 AATGCCCTCCTTGTCCTGAATCTT-TGACTTGACATTGTCGATGGTATCAGAAGACTCAA 246156
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737
| |||| ||||| || || || || | ||| || ||
Sbjct 246157 CCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGAC 246193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328700831190720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |