Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq576 120 1e-21 seq459 98.7 3e-15 >seq576 Length=178989 Score = 120 bits (132), Expect = 1e-21 Identities = 131/173 (76%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||||| | |||| || || || || || | || || || | || || ||||| || | Sbjct 150778 CTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGT-GCCT 150836 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | ||||||||||||||| | || |||||||| ||||||| |||||||||||| |||| Sbjct 150837 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACG 150896 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 | |||||| ||| || |||||| | || |||||||||||| || |||||| Sbjct 150897 AGCTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTAC 150949 >seq459 Length=266450 Score = 98.7 bits (108), Expect = 3e-15 Identities = 214/313 (68%), Gaps = 12/313 (4%) Strand=Plus/Plus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| ||||||| ||||||||| |||||||||||||| || || ||| ||| ||| Sbjct 92005 CCTATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTGGCAACAAGCGC 92064 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA--CATTGAACGGTTTTTAC 255098 || || || ||| |||| ||||| ||||| ||||||||||| || || || || Sbjct 92065 CCCGGTGCTTTCGCCATTTACCTTGAGCCTTGGCACGCCGATGTCTTCGAC--TTCTT-- 92120 Query 255099 TGCTGTCCGACAAGA---CCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTG 255155 | | | || ||||| ||||| |||||| | |||||| ||| | | | ||| Sbjct 92121 GGATTTGCG-CAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGACCTTTTCCTCGCCC 92179 Query 255156 TCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGGAGCCTCATG 255214 ||||| ||| || || ||| | ||||| | || | | | ||||| |||||| Sbjct 92180 TCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGA-ATGGGGACTGGACTCTCATG 92238 Query 255215 TGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTAT 255274 || |||||| || || || || | ||||| | || || |||||||| |||| Sbjct 92239 TGCCCCAACGAATGCCCTGGCCTGGCCGACTGCTACGGCGAGGAGTTTGAGGCCTTGTAC 92298 Query 255275 CTGGAGTACGAGC 255287 | ||||||||| Sbjct 92299 GAGAAGTACGAGC 92311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588319902710995