Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq576 120 1e-21
seq459 98.7 3e-15
>seq576
Length=178989
Score = 120 bits (132), Expect = 1e-21
Identities = 131/173 (76%), Gaps = 1/173 (1%)
Strand=Plus/Plus
Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758
||||| | |||| || || || || || | || || || | || || ||||| || |
Sbjct 150778 CTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGT-GCCT 150836
Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818
| ||||||||||||||| | || |||||||| ||||||| |||||||||||| ||||
Sbjct 150837 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACG 150896
Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871
| |||||| ||| || |||||| | || |||||||||||| || ||||||
Sbjct 150897 AGCTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTAC 150949
>seq459
Length=266450
Score = 98.7 bits (108), Expect = 3e-15
Identities = 214/313 (68%), Gaps = 12/313 (4%)
Strand=Plus/Plus
Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040
|| ||| ||||||| ||||||||| |||||||||||||| || || ||| ||| |||
Sbjct 92005 CCTATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTGGCAACAAGCGC 92064
Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA--CATTGAACGGTTTTTAC 255098
|| || || ||| |||| ||||| ||||| ||||||||||| || || || ||
Sbjct 92065 CCCGGTGCTTTCGCCATTTACCTTGAGCCTTGGCACGCCGATGTCTTCGAC--TTCTT-- 92120
Query 255099 TGCTGTCCGACAAGA---CCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTG 255155
| | | || ||||| ||||| |||||| | |||||| ||| | | | |||
Sbjct 92121 GGATTTGCG-CAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGACCTTTTCCTCGCCC 92179
Query 255156 TCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGGAGCCTCATG 255214
||||| ||| || || ||| | ||||| | || | | | ||||| ||||||
Sbjct 92180 TCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGA-ATGGGGACTGGACTCTCATG 92238
Query 255215 TGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTAT 255274
|| |||||| || || || || | ||||| | || || |||||||| ||||
Sbjct 92239 TGCCCCAACGAATGCCCTGGCCTGGCCGACTGCTACGGCGAGGAGTTTGAGGCCTTGTAC 92298
Query 255275 CTGGAGTACGAGC 255287
| |||||||||
Sbjct 92299 GAGAAGTACGAGC 92311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588319902710995
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |