Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq459 316 3e-81
seq576 138 1e-27
>seq459
Length=266450
Score = 316 bits (350), Expect = 3e-81
Identities = 1183/1834 (65%), Gaps = 47/1834 (3%)
Strand=Plus/Minus
Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864
||||||||||||| || |||| | || ||||||||||| |||||||| || |
Sbjct 93439 TGAACTGAATGGGAGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTCAGGC 93380
Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924
| |||||||| | | |||||| || | |||| | ||| || | ||||
Sbjct 93379 CGAGCTTCCAGCCGGCGAAATGCATGCTGGTTATCTTGCCCATGGTCGGGTCCTTCATGT 93320
Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984
| ||| | || || || ||||||||| || || || || ||||| | | |
Sbjct 93319 GAATGTTGAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGCACAA 93260
Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATAT 118044
|| | | ||| ||||| |||||| |||| ||| ||| | ||| || || |
Sbjct 93259 CAGTACGCTGCGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGAATGT 93200
Query 118045 CCACGATATTTTGGATGGATCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTG 118101
||| || |||||||| ||| || | | |||| | | |||||| | | |
Sbjct 93199 TGGGGATGTTCTGGATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGG 93143
Query 118102 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 118161
|||| ||||| || | |||||||| || ||| |||||||| |||||||
Sbjct 93142 ACCACAGACCCATGTCGACGAGATCCTTCAAGAGCCAAGGGTTGACAACCTGGAACTCAC 93083
Query 118162 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 118221
| || || || | | | ||||| |||| ||||| |||||||||||||| ||||| |
Sbjct 93082 CAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGC 93023
Query 118222 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 118281
||||||| || | ||| ||| || |||||||| || | |||||| ||| |||| ||
Sbjct 93022 CCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACAC 92963
Query 118282 CCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 118341
| | | | |||| | ||||| | ||| |||||||| || | | || | |
Sbjct 92962 CGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCCCAGAGATCCGAGGGCTTGACAT 92903
Query 118342 GCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 118401
|||||| ||| |||||||||| || || || | || || ||||| | |||| || |
Sbjct 92902 TCCACATGTCATACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGG 92843
Query 118402 GGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTT 118458
||||||| ||| |||| | | || | | |||||| ||||| || || || |
Sbjct 92842 GGCCCTCCTCCTTGGCCAGCTGCACCGACATGGT---GAGGGCAGCGTGGTAGATGGTCT 92786
Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAA 118518
| || || || | | |||||| || || || | | ||| |
Sbjct 92785 CGAAGATCTTCTTGTTGAGGTCGCGAGCCTCGGGAGACTCGAAGGGCATACGGAGAGCCA 92726
Query 118519 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 118578
|| |||| || ||||| ||||||||||| || || ||||| || | ||| || |
Sbjct 92725 GGAAGGCATCAGCAAGACCCTGGACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGT 92666
Query 118579 TCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 118638
| ||||| || || || || || ||||| | || || || || | |
Sbjct 92665 TGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAA 92606
Query 118639 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTG--- 118694
| |||| |||| || || ||||| | | | || | ||| | ||| | | |
Sbjct 92605 CGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGACTCC----CTCGTTGTAGTCA 92550
Query 118695 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 118754
||| | | || ||||||| || ||||| || || |||| | |||||| | |
Sbjct 92549 ACAAAGGTGGGCAGGGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAG 92490
Query 118755 TACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 118814
||||| ||||| |||||||| | ||| || || || ||||| | |||||| || ||
Sbjct 92489 TACTCGATAATCTCCGTGCAGAGGTTGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTG 92430
Query 118815 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 118874
||| ||| ||||||||||| |||||| | || | || ||||| || |||| |
Sbjct 92429 CTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCC 92370
Query 118875 TTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGG----CTCGCCCCT 118929
| ||| || || | ||||| | || | ||| || ||| ||| || |||| |
Sbjct 92369 TCGAGGATGGCATACCAGAGCTTCTG-AGCCTTCA---TGGTCTTGCGACCCTTGCCCAT 92314
Query 118930 CTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTG 118989
|| | |||||||| ||| | ||| |||||||| || || | || | || || |
Sbjct 92313 CTGC-TCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGGCCAG 92255
Query 118990 GTGCCTTATCTGGG-CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 119048
| || || |||| || | ||||| ||| | ||| || ||| |||| ||||||||||
Sbjct 92254 G-GCATTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATGAAG 92196
Query 119049 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 119108
||||| || |||||||| || ||| || || || |||| | || || | || ||
Sbjct 92195 AGGTCGGGAATCCAGAGGGCGAGGAAAAGGTCACGGGCGCGAACCTCCTCCTTGCCGTGG 92136
Query 119109 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 119168
|| ||||| ||||| ||||| | || ||| |||||||| || || ||||| | |||
Sbjct 92135 TTCTTGCGCAAATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGCG 92076
Query 119169 ATTG-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAAT 119222
| | || | ||| | | ||| |||||| || || | |||||| ||| ||
Sbjct 92075 AAAGCACCGGGGCGCTT--GTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAG 92019
Query 119223 ACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTA 119282
||||| ||||| || | || ||| | ||| || || || || |||| ||
Sbjct 92018 ACACGGAGCATAGGGACGACACCGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCG 91959
Query 119283 TTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCG 119342
|||| | || ||||| || | |||||| || || ||| ||| ||||| |||
Sbjct 91958 GTGGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCG 91899
Query 119343 CACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAG 119402
|| | |||| || | ||||| || || || ||||| |||| | ||| |||||||
Sbjct 91898 CAAGTCTTGAGGGTGTCATAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAG 91839
Query 119403 CAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGAT 119461
|| |||| || |||||| || ||||| ||||||||||| || || | ||||| |
Sbjct 91838 CAAGAGGACAGCTG-GGCCTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGT 91780
Query 119462 GAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCG 119519
|| | | |||| |||||| || |||||| || | |||| || ||| || ||
Sbjct 91779 GA--AGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCC 91722
Query 119520 TGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCG 119579
||||| | | ||| ||||| | ||||| |||||| | || | | || ||
Sbjct 91721 CAGATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCA 91662
Query 119580 AGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 119613
||| | ||||||| ||||||| |||||||
Sbjct 91661 AGCTTGAGGAGGTATGATCTCTCCAAAGTCTTGA 91628
>seq576
Length=178989
Score = 138 bits (152), Expect = 1e-27
Identities = 346/519 (67%), Gaps = 14/519 (3%)
Strand=Plus/Minus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| |||| |||||||| |||||||| ||||| ||| ||| | ||| ||||||||
Sbjct 151224 TAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATG 151165
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846
|| ||||| ||||| || || | | || || | || | | ||| ||
Sbjct 151164 AAGTCAAAGGGGTTGGAAGACTTGTAGACCT-TGTCATTGCCGAGAGCAACCAAGAGGCG 151106
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
|| | || |||||||||||| |||| | ||||||||| |||| || ||
Sbjct 151105 GTCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGAGCGCA 151046
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| || || || | |||| ||| |||||| | ||||| || | |||| | |
Sbjct 151045 AGGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTTGACAGCATCGACGATGATGTCCTC 150986
Query 129967 AATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023
|||| || | ||| || | | ||| | || | || ||| || ||| || ||
Sbjct 150985 AATGACCTGCTTGCTGGGGCGGTTCTTGAGGTGAGAGTAGAGGAG--GCA-GGCGAAGTC 150929
Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083
||| |||||||| ||||| ||||| || || || |||||| |||||| ||||| ||
Sbjct 150928 GGTGTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATAAG 150869
Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
||| |||||||| | |||||| || | || | || ||||||||| ||||| ||
Sbjct 150868 ACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCAAC 150809
Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---AAACCACTT 130200
||||| |||| |||||||| || ||||| |||||| ||| || ||||||
Sbjct 150808 GGCGGCGAAGGCAACGAGACGCTGGGCGAAGGA---GGACTTCTCATCGCTAATCCACTT 150752
Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGT 130239
|| ||||| | ||||| || ||| || || || ||
Sbjct 150751 CAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGAACTGT 150713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618429085221960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |