Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq223 143 8e-29 seq718 120 9e-22 seq649 111 5e-19 seq48 86.0 2e-11 >seq223 Length=337804 Score = 143 bits (158), Expect = 8e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | | || ||||||||||| || ||||| || || || || || Sbjct 245516 TTACTGACCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTA 245575 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 |||| || || || ||||| || | || || ||||||||||| ||||| ||||| || Sbjct 245576 ATCACTCAAGGTGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTC 245635 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 |||||||| || || || |||||||| || | || || || ||||||| || || | Sbjct 245636 GGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGA 245695 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || ||||||| |||||||| || | || || || ||||| ||||| Sbjct 245696 CTCGACCTCTAGTGTAATCGTCTTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 245749 Score = 120 bits (132), Expect = 9e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || ||||| || ||||| || ||||| Sbjct 245975 CATACCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATC 246034 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || || || ||||| | || ||||| ||||| Sbjct 246035 GGACAGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGG 246094 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || |||||||| || | || ||||| || || | |||||| | || Sbjct 246095 GGGAATGCCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTC 246154 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||| ||||| || | ||||| ||||| || || || || Sbjct 246155 AACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGAC 246193 Score = 107 bits (118), Expect = 6e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | ||||| || ||||| || || || || || || Sbjct 246259 CATACCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 246318 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || ||||| || || || || || ||||| ||||| Sbjct 246319 GGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGG 246378 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || | || ||||| || || | ||| || | || Sbjct 246379 GGGAATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTC 246438 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 || ||||| || | ||||| ||||| Sbjct 246439 GACCTCAAGGGTGATGGTCTTGCCGGT 246465 >seq718 Length=599240 Score = 120 bits (132), Expect = 9e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||||| || ||||| || || || || || || Sbjct 160016 CATACCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 159957 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || |||||||||||||| || || ||||| ||||| Sbjct 159956 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGG 159897 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || ||||| || || | || || | || Sbjct 159896 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTC 159837 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || ||||| || || || || |||||||| Sbjct 159836 CACCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 159786 >seq649 Length=379898 Score = 111 bits (122), Expect = 5e-19 Identities = 435/674 (65%), Gaps = 10/674 (1%) Strand=Plus/Plus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 ||||| || ||||| |||||||| |||||||| || || || | ||| || || || || Sbjct 295703 GAAATCATCGCAAACGATCAAGGAAACAGAACCACACCGTCTTTCGTCGCCTTCACGGAC 295762 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| |||| || ||| | || || || || | || || || | || ||| Sbjct 295763 ACGGAGCGTCTGATCGGCGATGCGGCCAAGAACCAGGTGGCGATGAACCCGCACAACACG 295822 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACACAATCTGA 349440 || || || || ||||| || || || | ||||| | ||| || | || Sbjct 295823 GTGTTCGACGCCAAGCGCCTGATCGGGCGCAAGTTCAAC-GACCCGGAGGTGCAGGCCGA 295881 Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGA-CGGTGATAAACCAATTATTGAGG 349499 | || || || || || | || || | | |||| ||| || || | || |||| Sbjct 295882 CATGAAGCACTTCCCGTTCAAGGTGGT-CGACAAGAACGGC---AAGCCCAACATCGAGG 295937 Query 349500 TTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 | || | || || || || || || || ||||| || || || | ||||| | Sbjct 295938 TCGAGTTCAAGGGCGAGACCAAGACG-TTCACGCCCGAGGAGATCTCGGCCATGGTCCTG 295996 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || || ||| || | ||| || || | | |||| || | | || || | Sbjct 295997 GTCAAGATGCGCGAGACTGCCGAGGCTTTCCTCGGTGGCCAGGTCAACAACGCCGTCGTC 296056 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || ||||| || || || |||||||| || || || || || || |||| Sbjct 296057 ACTGTCCCCGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGACGCCGGTCTCATT 296116 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || || || | || || || || ||||| || || || || || || || Sbjct 296117 GCCGGCCTCAACGTGCTGCGCATCATCAACGAGCCCACCGCCGCCGCCATCGCGTACGGC 296176 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 || || || | | || || || |||| || || ||| | ||||||||||| Sbjct 296177 CTGGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGATCTCGGTGGTGGTACC 296236 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || || || |||| ||||| || || || || || | || |||||| Sbjct 296237 TTCGATGTGTCCCTCCTGACCATTGAGGAGGGCATCTTCGAGGTCAAGTCCACCGCTGGT 296296 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || | ||||| || || || || || || ||||| || || || || || Sbjct 296297 GACACCCACTTGGGTGGTGAGGACTTCGACAACCGCCTCGTCAACCACTTCGTCAACGAG 296356 Query 349919 TTTAAGCGTCAAGC 349932 || ||||| ||||| Sbjct 296357 TTCAAGCG-CAAGC 296369 >seq48 Length=60367 Score = 86.0 bits (94), Expect = 2e-11 Identities = 98/131 (75%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || |||||| | || || ||| || || | |||||| || || ||||| || || Sbjct 53244 CGAGGGACACCAAGCGTGACGTTC---TTGGAAGAAACACCGGCGAAATGGAATGTGTTC 53188 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| |||||||||||| ||||| |||||||| || || ||||| || Sbjct 53187 AGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATGACACCGACCATCTCA 53128 Query 377578 CCAGGATTGAC 377588 ||||| |||| Sbjct 53127 CCAGGGCTGAC 53117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515239043370173