Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq459 322 5e-83
seq506 118 1e-21
>seq459
Length=266450
Score = 322 bits (356), Expect = 5e-83
Identities = 534/764 (70%), Gaps = 24/764 (3%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| |||||| | |||||| ||||||||| ||| ||| || || |||
Sbjct 91697 TCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTCATCGAAACCTACA 91756
Query 53253 ACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309
|| | ||| ||| |||| ||| || |||||| | || || || |||||||| ||||
Sbjct 91757 ACCTGATGTCGAGC---AAGTTCTTCACTCACGCCTCTCCCACACTCTTCAACGCCGGTA 91813
Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369
| ||| | ||| |||| |||||||| || | |||||||| ||||| || || |
Sbjct 91814 CCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGACTCTATTGAGG 91873
Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429
| ||||| || || |||||| || ||| ||||||||| | | ||||| || |||
Sbjct 91874 GTATCTATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGGTGGCATTGGTC 91933
Query 53430 TCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487
|| || || | || |||| || | |||| || || || |||||||| | |
Sbjct 91934 TCAACG--TCCACCGCATCCGCGCCACCGGCTCATATATTGCCGGCACGAACGGTACCTC 91991
Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547
| | || |||| ||||||||||| |||||||||||||| || || |||||| |||||||
Sbjct 91992 CAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGG 92051
Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607
||| |||||| || | |||||||| ||||| ||||| ||||||||||| | |
Sbjct 92052 TGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCTTGGCACGCCGATGTCTT 92111
Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667
|| || | || |||| ||| || || | || ||| | ||| ||||||||| ||
Sbjct 92112 CGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGACCTTTT 92171
Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727
|| || |||||||| |||||||||||| | | |||||||||| | | ||| |||
Sbjct 92172 CCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAATGGGGACTGGAC 92231
Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACG 53786
|| |||||||| ||||| ||||| ||||| | | || |||||| ||||||||| | |
Sbjct 92232 TCTCATGTGCCCCAACGAATGCCCTGGCCTGGCCGACTG-CTACGGCGAGGAGTTTGAGG 92290
Query 53787 AGATGTATCGGACGTAC--GCAGTT----CAGGGCCGCTACAAGAAGAAGGTCAAGGCGC 53840
|||| || |||| |||| | |||| ||| |||| | ||||| |
Sbjct 92291 CCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGC------AAGACCATGAAGGCTC 92344
Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900
|| | ||| |||| |||||| || |||| ||||| || | || | |||| ||
Sbjct 92345 AGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTTCATGCTCT 92404
Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944
|||||||| | | |||| |||||||||||||||||| | |||
Sbjct 92405 ACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGC 92448
Score = 138 bits (152), Expect = 1e-27
Identities = 547/846 (65%), Gaps = 26/846 (3%)
Strand=Plus/Plus
Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156
||||| | ||||| ||||| || || | || || || ||||||||| | |||||
Sbjct 92572 GACTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTCCGCAACCTGAACAGAATCATC 92631
Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216
||| || ||||||| | | | ||| ||||| |||| | || ||||| ||||||
Sbjct 92632 GACGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCCATC 92691
Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCG 55276
| ||||||| ||||| | || || |||| || ||| | |||||||||| ||
Sbjct 92692 GGTCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTATGCCCTTCGAGTCT 92751
Query 55277 GAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGA 55335
||||| || | ||| || | |||||| || | ||||||| || || |||
Sbjct 92752 CCCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGAC-CATCTACCACGCTGCCCTCAC 92810
Query 55336 GGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCAGC 55395
|||| || ||||| | | ||||| ||||| |||||| | | ||| || |
Sbjct 92811 CATGTCGGTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCTGT 92870
Query 55396 TGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCATGTT-TG 55448
| |||| | ||||||| || | ||| | |||| || || | | | ||
Sbjct 92871 TTCTCAGGGCATCCTCCAGTATGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGACTG 92930
Query 55449 ACAAG--TTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCC 55506
| | |||||| | | ||| | | || | |||||||| || ||||| |||||
Sbjct 92931 GGATGCTTTGAAGGAGCAGATTAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCGCC 92990
Query 55507 AATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACAC 55566
||||| || || || | |||||| |||||||||||||| || ||||| |||||
Sbjct 92991 CATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTACAC 93050
Query 55567 GACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCT 55626
|||||||||||| ||| || || || |||||||| | ||||| ||
Sbjct 93051 CTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAACCCTTGGCT 93110
Query 55627 CGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAAGA--CGGAT-ATT 55681
| | ||||| || | || |||| ||| | || |||| || || |||
Sbjct 93111 CTTGAAGGATCTCGTCGACATGGGTCTGTGG--TCCGATGCCATGAAGAACCGCATCATT 93168
Query 55682 GTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGATTCCT-CTGCGTCTCAAGGAGAT 55737
| |||| || ||| ||||||| | | |||||| ||| | |||||| |
Sbjct 93169 GCCGAGAAC---GGTTCCATCCAGAACATCCCCAACATTCCTACTGAG-GTCAAGGCCCT 93224
Query 55738 TTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGG 55797
||| ||| || |||||||| | ||| | | | | | ||| ||| || |||||
Sbjct 93225 GTACAAGACTGTTTGGGAGATCTCGCAGCGTACTGTTGTGCAGATGGCTGCCGACCGTGG 93284
Query 55798 TGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAA 55857
||| | |||||||||||| ||||| || ||||| |||| || | || | ||| |||
Sbjct 93285 TGCCTTCATCGACCAGTCGCAGTCGCTCAACATTCACATGAAGGACCCGACCATGGGCAA 93344
Query 55858 GTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCT 55917
| | | | ||||| || ||| |||||| || || |||||||| |||||||| ||
Sbjct 93345 GATAACCAGCATGCATTTCGCCGGCTGGAAGCTCGGCCTGAAGACGGGCATGTACTACCT 93404
Query 55918 GCGGAC 55923
||| ||
Sbjct 93405 GCGCAC 93410
>seq506
Length=368655
Score = 118 bits (130), Expect = 1e-21
Identities = 203/293 (69%), Gaps = 4/293 (1%)
Strand=Plus/Plus
Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369
||||||||||| || ||||||||| ||||| |||||||| | |||||| | |||
Sbjct 164548 AATGTAACGAGGACTGGCAGCATCCGAACCACCGGCAAGACGAGAACCGAAGTTTCCGGA 164607
Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429
|||||||| | ||| | |||||| | ||| || ||||| || || | | | || ||
Sbjct 164608 CGGCTCCAGGCAGTTGATGTTGTTAGAGCCTACGAAGTTCTGCGCAAGGCCAATGATGGT 164667
Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489
||||| || || || ||||| || | ||||||||| | | ||| || ||||
Sbjct 164668 CTGCTGGAGAGAGGCTTCGCCGTGGTGGTAGGACGTCTGCTCGGAAATGTAACCGGCCAA 164727
Query 117490 CTGAGCCACCTTC--ATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTG 117547
| | |||||| || |||| | |||| |||||| ||||| || || |||||
Sbjct 164728 TTCGACGACCTTCTGATCCTTGAC--TAAGTTCCTCTTGAAACAGGCGTATATAACCTTA 164785
Query 117548 CGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600
||||||| ||||||| ||||| ||| ||||| || ||| || ||||
Sbjct 164786 CGCTGACCGGGCTTCAATCCATCGATGACGGAGGGGATAGATCGCATGTTGTC 164838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547210589401800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |