Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq628 93.3 3e-14 >seq628 Length=479240 Score = 93.3 bits (102), Expect = 3e-14 Identities = 353/558 (63%), Gaps = 66/558 (12%) Strand=Plus/Minus Query 29957 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 30016 || ||||||| ||| || || | |||||| |||||||| ||||| || ||||| ||||| Sbjct 98608 GCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGGCACGCCGAGGCCCATA 98549 Query 30017 TCCCCCGACCTCTGGTAGAGCTGACACGAGAG---------------CTCTCCGTC---- 30057 || | |||| |||||| |||||||| || ||||||||| Sbjct 98548 TCGCAGGACCGCTGGTACAGCTGACAGTGCAGGTGCCCCTTTGGCTTCTCTCCGTCAGCG 98489 Query 30058 ------------GCTC-----------ACGTAAAACTG---ACACATGGCGTGGCACGGA 30091 |||| ||||| ||||| | ||||| ||||| || Sbjct 98488 GGTGCACCGCGGGCTCGCGGGTAGGAGACGTAGAACTGCGCAAACATG---TGGCATGGC 98432 Query 30092 GGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT 30151 || || ||||| | ||| ||||||||| |||| | || |||||| | ||| Sbjct 98431 GGGAGGGCCATCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGGAGGATGCGGCGGTCG 98372 Query 30152 TCTGGGTTGTTCCTGAT------GAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATC 30205 | || || || | | || | || ||||| ||||| || || ||| Sbjct 98371 TACGGATTCGTCTTCAGCTTGTGGATGACCTCGGCG------AGCTGGTCGACGCCCTGG 98318 Query 30206 CCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCG 30265 |||| ||| || | | | ||| ||||| || || || || | ||| ||||| ||| Sbjct 98317 CCCGTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCCATTGGAAACCG 98258 Query 30266 TACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCT 30325 || || || || ||||| || |||| | |||| || || |||| | || || Sbjct 98257 TAGACAGGGCCGAGGTCGCCAACTTCGCGGTGCGAGAGACCAACGCTGTCGAGGAACTCG 98198 Query 30326 CTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTG 30385 | || |||||| ||||||||||||| || ||| ||| || | |||| |||| Sbjct 98197 CGCGAGCCGTTGCCGTCCCAGATCTTGACGCCCGCCTCGCTCAGTGCGAGGGAGGATGTG 98138 Query 30386 -GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA--AAGACCCTCTTG 30442 ||||| |||||||||||||||||| | | |||||| | || ||||| | ||| Sbjct 98137 TTGCCCTC-GACGAACCACAGCAGCTCAGCGATGACGGC--GCGAAGGAAGACGCGCTTC 98081 Query 30443 GTCGTGAGGAGGGGAAAC 30460 || || |||||||| ||| Sbjct 98080 GTAGTAAGGAGGGGCAAC 98063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406306483040772