Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq628 114 1e-20
>seq628
Length=479240
Score = 114 bits (126), Expect = 1e-20
Identities = 213/302 (71%), Gaps = 8/302 (3%)
Strand=Plus/Plus
Query 34321 GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TCC 34379
||| || ||||||||||||| |||| || || || || || |||| ||| ||| ||
Sbjct 98165 GGGCGTCAAGATCTGGGACGGCAACGGCTCGCGCGAGTTCCTCGACA-GCGTTGGTCTCT 98223
Query 34380 CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439
| || || | |||||| | ||||| |||||||| ||||| ||| |||||||||| |
Sbjct 98224 CGCACCGCGAAGTTGGCGACCTCGGCCCTGTCTACGGTTTCCAATGGCGACACTTTGGCG 98283
Query 34440 CGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTA 34497
| |||||| | | || ||| |||| || |||| ||||| | |||||||| || | |
Sbjct 98284 CCGAGTAT-GTCGACGCCAAGACGGATTACACGGGCCAGGGCGTCGACCAGCTCGCCG-A 98341
Query 34498 CGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAA 34557
|| ||| ||| ||||| ||| || | ||| | | ||| | | ||||||||||
Sbjct 98342 GGTCATCCACAAGCTGAAGACGAATCCGTACGACCGCCGCATCCTCCTCAGCGCGTGGAA 98401
Query 34558 CCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACG 34616
||| ||| || |||||| ||||| || ||||||| | ||| || |||||||
Sbjct 98402 CCCCGCGGACCTAAAGAAGATGGCCCTCCCGCCATGCCACA-TGTTTGCGCAGTTCTACG 98460
Query 34617 TC 34618
||
Sbjct 98461 TC 98462
Score = 114 bits (126), Expect = 1e-20
Identities = 213/302 (71%), Gaps = 8/302 (3%)
Strand=Plus/Minus
Query 6727 GACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785
||||||||| || ||| | ||||||| || ||||| |||||| || ||| |
Sbjct 98462 GACGTAGAACTGCGCAAACA-TGTGGCATGGCGGGAGGGCCATCTTCTTTAGGTCCGCGG 98404
Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845
|||||||||||| | | ||| | | ||| | || ||| ||||| ||| ||| |
Sbjct 98403 GGTTCCACGCGCTGAGGAGGATGCGGCGGTCGTACGGATTCGTCTTCAGCTTGTGGATGA 98344
Query 6846 CGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTC 6903
| | | || |||||||| | ||||| |||| || |||| ||| || | | ||||||
Sbjct 98343 CCT-CGGCGAGCTGGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGAC-ATACTC 98286
Query 6904 CGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGA 6963
|| |||||||||| ||| ||||| |||||||| ||||| | |||||| | || ||
Sbjct 98285 GGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCGCGGTG 98226
Query 6964 TGGGA-ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCC 7022
| || ||| ||| |||| || || || || || |||| ||||||||||||| || |
Sbjct 98225 CGAGAGACCAACGC-TGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGC 98167
Query 7023 CC 7024
||
Sbjct 98166 CC 98165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448257967805520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |