Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq223 172 1e-37
seq718 158 3e-33
seq338 120 7e-22
>seq223
Length=337804
Score = 172 bits (190), Expect = 1e-37
Identities = 173/225 (77%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | ||||||||||| || || ||||| || |||||||| || || | ||
Sbjct 245753 TCCACGGAGGCGAAGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAG 245812
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | ||||||||||||||||| || ||||| || ||||| || ||||| || || |
Sbjct 245813 GGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGAT 245872
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|| ||||||||||||||||| || ||||| ||||||||||| || ||| |||||
Sbjct 245873 ACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTC 245932
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || ||||| || ||||| ||||| || || | ||||||
Sbjct 245933 AAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 245977
Score = 163 bits (180), Expect = 7e-35
Identities = 156/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || |||||||| || || ||||| ||||| | ||||||| ||| ||
Sbjct 245994 AGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCCGTCC 246053
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||||||||||||||| | ||| || |||||||| |||| || |||||||||
Sbjct 246054 TCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 246113
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| |||||| || || || |||||||| ||||| |||||||| || ||||| |||
Sbjct 246114 TGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTC 246173
Query 211083 TTTCCCGTGAGAGTCTTTAC 211102
|| || || || ||||| ||
Sbjct 246174 TTGCCGGTAAGCGTCTTGAC 246193
Score = 149 bits (164), Expect = 1e-30
Identities = 170/226 (75%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAA 210948
|| ||| || | |||||||| ||||| || ||||| || |||||||| ||||| | |||
Sbjct 245525 TCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAA 245584
Query 210949 GGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008
|| | | ||||| |||| |||||| || || |||||||| || || ||||| |||||||
Sbjct 245585 GG-TGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAA 245643
Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068
|| ||||||||||| ||||| || ||||| || || ||||| || || ||||
Sbjct 245644 TGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCT 245703
Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
| || || ||||||||||| || | ||||| || || | |||||
Sbjct 245704 CTAGTGTAATCGTCTTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 245749
Score = 149 bits (164), Expect = 1e-30
Identities = 153/200 (77%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | |||||| |||||||| || |||||||| || || | |||||
Sbjct 246268 ACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 246327
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || |||||||| || ||||| || ||||| || |||||||| |||| ||
Sbjct 246328 GCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATGCC 246387
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||||||||||||| || || || |||||||| || ||| || ||||| ||
Sbjct 246388 CTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTCGACCTCAAG 246447
Query 211073 AGTGATCGTCTTTCCCGTGA 211092
||||| ||||| || ||||
Sbjct 246448 GGTGATGGTCTTGCCGGTGA 246467
>seq718
Length=599240
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | |||||| |||||||| || |||||||| || || | ||||| | || ||
Sbjct 159997 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 159938
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || || ||||| ||||| || |||||||| || | || |||||||||
Sbjct 159937 TCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 159878
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||||||||| || || ||||| || ||||| |||
Sbjct 159877 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 159818
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || ||||| || || | ||||||
Sbjct 159817 TTACCCGTTAGGGTCTTGACGAAGATCTGCAT 159786
>seq338
Length=273437
Score = 120 bits (132), Expect = 7e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | ||||| | || || || ||||||||||| ||||||||
Sbjct 197689 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 197630
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| ||| || ||||| || || | || ||||||||||||||||| || || || |||
Sbjct 197629 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 197570
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| ||| || ||||| || || || ||||| ||||| || ||||| || ||
Sbjct 197569 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 197511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159140252356715
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |