Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq223 134 3e-26 seq718 125 2e-23 seq56 125 2e-23 seq459 122 2e-22 >seq223 Length=337804 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| || || || || || |||| ||||| || | || || | |||||| Sbjct 245766 AGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 245825 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || || || || |||||||| || ||||| |||||||| Sbjct 245826 TCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 245885 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || |||||||||||||| | ||| || || | || || ||| Sbjct 245886 TGGATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTC 245945 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 245946 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 245977 >seq718 Length=599240 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| | ||| || ||||| || || |||| ||||| |||| | || Sbjct 160007 ACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 159948 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||| ||||| || || || ||||| || || || || Sbjct 159947 GCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCC 159888 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| || | ||||| || | Sbjct 159887 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAG 159828 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| ||||| | || || | ||| | ||||| Sbjct 159827 GGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 159786 >seq56 Length=15875 Score = 125 bits (138), Expect = 2e-23 Identities = 198/281 (70%), Gaps = 7/281 (2%) Strand=Plus/Minus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || ||||||||||| |||| | ||||| || | ||||||| || ||| | | Sbjct 12533 ACTTTATATTTAATTTTTGCTTTATTTTCAGGGTTATTAGGTACAGCTTTCTCTGTATTA 12474 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTG-AGTGGTAATAGCCAACTTT 7558 ||||| ||||||||| || || ||| |||| ||||| || ||| |||| | | Sbjct 12473 ATAAGATTAGAATTAAGTGGACCAGGTGTTCAATATATTTCAG-----ATAACCAATTAT 12419 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | || ||| ||||| || ||||| | ||||||| |||||| | |||||||||| Sbjct 12418 ATAATAGTATAATTACAGCTCATGCTATACTTATGATATTCTTTATGGTTATGCCGGCAT 12359 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 | || || ||||| || || | || | ||||||||| | |||| ||||||||||| | Sbjct 12358 TAATTGGAGGTTTTGGTAACTTCTTAATGCCTTTAATGGTAGGTGGACCTGATATGGCAT 12299 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 | || || | || || |||||||| ||| || |||| ||| Sbjct 12298 TCCCTAGATTAAATAACATAAGTTTCTGACTATTACCTCCT 12258 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || |||||||| |||||||| | |||||| || | |||||||| ||||| || | Sbjct 11853 TTCTGGGTGACCAAAGAATCAGAAAAGATGTTGGTATAATATAGGATCACCTCCACCAGC 11912 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773 || || || || ||||||||||||||||| |||||||| Sbjct 11913 TGTTTCGAAGAATGATGTATTAAAATTTCTATCTGTTAAAAC 11954 >seq459 Length=266450 Score = 122 bits (134), Expect = 2e-22 Identities = 190/272 (70%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559 ||||||||| |||| || | ||| || ||||||| |||||||| | || ||| Sbjct 92438 TTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCG 92379 Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619 | || || |||| ||| || ||| || | ||||| |||| ||| | | |||| Sbjct 92378 GTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGAGCCTTCATGGTCTTGCGACCCTTG 92319 Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679 || | ||||||||| ||||||| ||||||| || | |||||| ||| | || Sbjct 92318 CCCATCTGCTCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAGG 92259 Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739 || || ||| || ||||| | |||| |||| || |||| | ||||||||||||||| Sbjct 92258 CCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATG 92199 Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 |||||||| | |||| | |||| |||||| Sbjct 92198 AAGAGGTCGGGAATCCAGAGGGCGAGGAAAAG 92167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192519114068954