Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq628 86.0 5e-12 >seq628 Length=479240 Score = 86.0 bits (94), Expect = 5e-12 Identities = 153/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || || | ||| ||||| ||||| || || || ||||| || |||| | |||| || Sbjct 98278 AAGTGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCGCGGTGCGAGAGA 98219 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || |||| | || || | || |||||| ||||||||||||| || ||| |||| Sbjct 98218 CCAACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCCGCCTCG 98159 Query 30137 GAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30195 || | |||| |||| ||||| |||||||||||||||||| | | |||||| Sbjct 98158 CTCAGTGCGAGGGAGGATGTGTTGCCCTC-GACGAACCACAGCAGCTCAGCGATGACGGC 98100 Query 30196 CTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30232 | || ||||| | ||| || || |||||||| ||| Sbjct 98099 --GCGAAGGAAGACGCGCTTCGTAGTAAGGAGGGGCAAC 98063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406159284459826