Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq223 132 1e-25
seq718 114 3e-20
seq338 84.2 5e-11
>seq223
Length=337804
Score = 132 bits (146), Expect = 1e-25
Identities = 159/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|||||||| || || |||||||| || ||||||||||| || | | || | ||||||
Sbjct 245766 AGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCT 245825
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| |||||||| || || | ||||||||| | | ||| || ||||| |
Sbjct 245826 TCCAGCTGCTTT--CCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGT 245883
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| || || || ||||| | || | | ||||||| || || ||||| |||||||
Sbjct 245884 CCTGGATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAG 245943
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| ||||| ||||| ||||| ||||||| ||||||
Sbjct 245944 TCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 245977
Score = 98.7 bits (108), Expect = 2e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|||||||||||||| || ||||| || |||||||||||||| || || | |||||
Sbjct 245538 AGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGGCCATCC 245597
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| | || || || |||||||| | ||||||||| | | || || ||||| ||
Sbjct 245598 TCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 245657
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| || ||||| | || | |||| ||| ||| || || || ||||| ||
Sbjct 245658 TGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGTC 245717
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || | ||||| ||||| | |||||
Sbjct 245718 TTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 245749
Score = 87.8 bits (96), Expect = 4e-12
Identities = 139/198 (70%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || ||||| || || ||||||||||||| | || | || || || |
Sbjct 245999 CAAG-TGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCCGTCCTCAA 246057
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || || |||||||| | | ||||||||| | | || || ||||| || ||||
Sbjct 246058 GCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAA 246117
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| ||| |||||| | || | | | || ||| ||| || ||||| || || || ||||
Sbjct 246118 TCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTGC 246177
Query 152077 CCGTGAGAGTCTTCACGA 152094
| || || ||||| ||||
Sbjct 246178 CGGTAAGCGTCTTGACGA 246195
>seq718
Length=599240
Score = 114 bits (126), Expect = 3e-20
Identities = 155/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | ||||| || ||||| || ||||||||||| |||| | || | || ||
Sbjct 159997 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 159938
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| || || ||||| || | ||||||||| | | ||| || ||||| |
Sbjct 159937 TCGAGCTGCTTT--CCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGT 159880
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| || || || |||||| | || | | |||| ||| ||| || ||||| || ||||
Sbjct 159879 CCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAG 159820
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || ||||| || ||||| ||||||| ||||||
Sbjct 159819 TCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 159786
>seq338
Length=273437
Score = 84.2 bits (92), Expect = 5e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| ||||||||||| |||| | || | || || || || || |||||||||||
Sbjct 197689 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 197630
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
| | ||||||||| | | ||| || ||||| || || || || |||||| | ||
Sbjct 197629 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 197570
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095
| |||| || ||| || ||||| ||||| || || ||||| || |||||||||||
Sbjct 197569 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 197511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153809106386761
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |