Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016-
04-12] 791 sequences; 52,719,552 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq718 172 1e-37
seq223 167 5e-36
seq338 143 6e-29
seq244 86.0 1e-11
>seq718
Length=599240
Score = 172 bits (190), Expect = 1e-37
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||||||||| || |||| || | ||| || || |||||||||||||| |
Sbjct 160013 ACCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 159954
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| || || || || |||||||||| || || |||||| ||
Sbjct 159953 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGG 159894
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| | || || | ||||| ||||| |||| || ||
Sbjct 159893 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 159834
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||||||||| | ||||| ||||| ||||||||
Sbjct 159833 CTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 159786
>seq223
Length=337804
Score = 167 bits (184), Expect = 5e-36
Identities = 176/229 (77%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCA-G 282930
||| |||||||| ||||| || ||||| | ||| || || ||||||||||| |||
Sbjct 245522 ACCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACT 245581
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
|||| |||||||||||||| | || || || |||||||| | ||| || ||||| |
Sbjct 245582 CAAG-GTGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAG 245640
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|||| ||||||||||| || ||||| | || ||| | || || |||||||||| ||||
Sbjct 245641 GAATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGA 245700
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || || || |||||||| || ||||| ||||| ||||| || |||||
Sbjct 245701 CCTCTAGTGTAATCGTCTTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 245749
Score = 154 bits (170), Expect = 3e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| |||||||| || || || | || || || ||||||||||||||||
Sbjct 245750 ACCTCCACGGAGGCGAAGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGA 245809
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| ||||| || || || || ||||| || |||| || || ||||| ||
Sbjct 245810 CAGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGG 245869
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||| |||||||| | || ||| | ||||| ||||| || | ||||||
Sbjct 245870 GATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGAC 245929
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || || || ||||| || || | ||||| ||||| ||||||||
Sbjct 245930 CTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 245977
Score = 138 bits (152), Expect = 2e-27
Identities = 153/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || |||| || | ||| || || |||||||||||||| |
Sbjct 246262 ACCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 246321
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| || || || ||||| || |||| || || |||||| ||
Sbjct 246322 CAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGG 246381
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||||| || || | ||||| || || || | |||||
Sbjct 246382 AATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTCGAC 246441
Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075
|| || ||||| ||||| || ||
Sbjct 246442 CTCAAGGGTGATGGTCTTGCCGGT 246465
Score = 123 bits (136), Expect = 5e-23
Identities = 160/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || |||| || | ||| || || || |||||||| || |
Sbjct 245978 ACCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGA 246037
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || || ||||| || || || || || |||||||| || || |||||| ||
Sbjct 246038 CAGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGG 246097
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| || ||||||| || || | ||||| || || |||| || ||
Sbjct 246098 AATGCCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAAC 246157
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATA 283092
|| || ||||| ||||| || || | ||||| |||| ||
Sbjct 246158 CTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGACGACTA 246198
>seq338
Length=273437
Score = 143 bits (158), Expect = 6e-29
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | || |||||||| ||||| || || || ||||| ||||||
Sbjct 197689 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 197630
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
|| || || ||||| || || ||||||||||| |||||||| | || || | |||
Sbjct 197629 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 197570
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| |||||||| | ||||| || || || || ||||||||||||| ||||| |||||
Sbjct 197569 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 197511
>seq244
Length=1692084
Score = 86.0 bits (94), Expect = 1e-11
Identities = 159/233 (68%), Gaps = 3/233 (1%)
Strand=Plus/Minus
Query 312486 CGCCCCCACTTGACACCGTTGACAATTGACTCGAAGTCATCGTTCAGGATAACGATATCG 312545
|| |||||||| | | |||||||| || | ||| | ||||| || || || ||| |
Sbjct 1014044 CGACCCCACTTCAGGGCCTTGACAATGGAGTTGAAATTATCGTCCATGAGAATGATCGAG 1013985
Query 312546 GCTGCTTCCTTTGCAATGTCTGTACC---ACTCCCCATTGCACACCCGACGTCTGCTTCC 312602
| |||||||| |||| || ||||| | | ||||| | | |||||||| || |
Sbjct 1013984 GACGCTTCCTTGGCAACTTCGGTACCGGCAATACCCATGGAGAAGCCGACGTCGGCCGTC 1013925
Query 312603 TTAAGAGCCGGGGCGTCGTTAGCACCATCGCCACTCGATGCGACGACGTGGCCAAGGGCC 312662
|| || || || || ||||| | || || || || || |||| || || |||||
Sbjct 1013924 TTGAGCGCGGGAGCATCGTTGGTTCCGTCTCCGGTCACAGCAACGATGTCACCCTGGGCC 1013865
Query 312663 TTCATGAGCTGAACCAACTTATACTTATCCTCTGGGGATGAACGGGCAAGAAC 312715
|| | | ||| ||||| || ||| ||||| ||| || |||||||||||
Sbjct 1013864 TTGAGGCGCTTCACCAAGATACGCTTGTCCTCGGGGCTGGAGCGGGCAAGAAC 1013812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046728591625314
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