Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618715.1_202016- 04-12] 791 sequences; 52,719,552 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq718 154 1e-32 seq223 129 4e-25 seq338 122 6e-23 >seq718 Length=599240 Score = 154 bits (170), Expect = 1e-32 Identities = 177/236 (75%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||| |||||| ||| |||||| ||||||||||| || Sbjct 160016 CATACCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 159957 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| |||| || |||||||| || |||||||||| |||||||| || | Sbjct 159956 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGG 159897 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 || | || ||||| ||| ||||| ||| || ||| | |||||||||| || Sbjct 159896 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGAAGAC 159839 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 |||||||| | || || ||||| ||||| |||||||| |||||||| |||||||| Sbjct 159838 TCCACCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATGAT 159783 >seq223 Length=337804 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| || | || ||| | || ||| Sbjct 245769 ACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 245828 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || |||| |||||||| || | || | ||| ||||| ||| Sbjct 245829 AGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGG 245888 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | | | |||||||| | ||||| ||||| | ||||| ||||| Sbjct 245889 ATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTG 245948 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||||||| |||||||| ||||| Sbjct 245949 CCAGTGAGGGTCTTGACGAAGATCTGCAT 245977 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 || || |||||||| |||||| |||||||||||||| | || || || | || || Sbjct 245541 ACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGGC-CATCCTC 245599 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || |||||||| | ||||||||| || | ||| | || ||||| ||| Sbjct 245600 CAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTG 245659 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||| | | | || ||||| | || || ||||| | ||||||||||| Sbjct 245660 AATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGTCTT 245719 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | |||||| ||||| |||||||| Sbjct 245720 TCCAGTCAAGGTCTTGACGAAAATTTGCAT 245749 Score = 102 bits (112), Expect = 6e-17 Identities = 137/189 (72%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| |||||| ||||||||||| |||| || ||| |||| || Sbjct 246281 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCA 246340 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || |||| |||||||| || | || | || ||||| ||| Sbjct 246341 AGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGG 246400 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | ||||| |||| ||| || ||||| | || || |||| Sbjct 246401 ATCTTTGACTTGACATTGT--CGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCT 246458 Query 44307 TTCCCGTGA 44315 | || |||| Sbjct 246459 TGCCGGTGA 246467 Score = 100 bits (110), Expect = 2e-16 Identities = 157/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | || ||||| ||| || ||| |||||| || ||||||||||| Sbjct 245975 CATACCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATC 246034 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || || |||| || |||||||| || || |||||||| |||||||| || | Sbjct 246035 GGACAGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGG 246094 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 || | || ||||| ||| ||||| ||| || ||| | ||||| || | || Sbjct 246095 GGGAATGCCCTCCTTGTCCTGAATCTTTGACTTGACATTGT--CGATGGTATCAGAAGAC 246152 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 || ||||| | || || ||||| || || || ||||| |||| Sbjct 246153 TCAACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGACGA 246195 >seq338 Length=273437 Score = 122 bits (134), Expect = 6e-23 Identities = 138/183 (75%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| ||| |||| || |||||||| ||||| |||| Sbjct 197691 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 197632 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| |||||||| || | || | || ||||| ||| ||||| ||| || ||| Sbjct 197631 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 197572 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||| | ||| || ||||| | ||||| ||||| ||||| ||||||||||| Sbjct 197571 --CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 197514 Query 44326 GAA 44328 ||| Sbjct 197513 GAA 197511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359986929580047