Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1177 84.2 2e-11 >seq1177 Length=83355 Score = 84.2 bits (92), Expect = 2e-11 Identities = 192/287 (67%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || |||||||| || ||| | |||||||| ||||||||||| || || Sbjct 27028 ATGTAGGTGTCGATGAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATTTGG 27087 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || || || ||||| ||||| || | | || || || || ||| || || | | Sbjct 27088 AAGCCATAGAAGCAACGGGCCTCGGGGACCTGGACCTCGCCGCTGAAGCGCTCGACCAAG 27147 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 || || || || |||||||| |||||||| || || | || ||| ||||| || Sbjct 27148 TTCTCATTGACAATGCCGTCAGAAGCGGCGAAGAAGGCGAGGATGTGCGAGATGAAGTAC 27207 Query 17414 TTTTCGTC--CGGTG-TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470 || || || || || | | | |||||| | | ||| ||||| | ||| | || Sbjct 27208 TTCTCATCCTCGTTGATCTTATTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCC 27267 Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 |||| |||||| ||| ||| | ||||| || ||||| | ||| || Sbjct 27268 TCGGCGGTCCAGAAAGAGGCCTCAGCCTTCTTGTACATCTGCCAGAT 27314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517534945029960