Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq1177 84.2 2e-11
>seq1177
Length=83355
Score = 84.2 bits (92), Expect = 2e-11
Identities = 192/287 (67%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
|| || || |||||||| || ||| | |||||||| ||||||||||| || ||
Sbjct 27028 ATGTAGGTGTCGATGAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATTTGG 27087
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353
|| || || ||||| ||||| || | | || || || || ||| || || | |
Sbjct 27088 AAGCCATAGAAGCAACGGGCCTCGGGGACCTGGACCTCGCCGCTGAAGCGCTCGACCAAG 27147
Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413
|| || || || |||||||| |||||||| || || | || ||| ||||| ||
Sbjct 27148 TTCTCATTGACAATGCCGTCAGAAGCGGCGAAGAAGGCGAGGATGTGCGAGATGAAGTAC 27207
Query 17414 TTTTCGTC--CGGTG-TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470
|| || || || || | | | |||||| | | ||| ||||| | ||| | ||
Sbjct 27208 TTCTCATCCTCGTTGATCTTATTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCC 27267
Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517
|||| |||||| ||| ||| | ||||| || ||||| | ||| ||
Sbjct 27268 TCGGCGGTCCAGAAAGAGGCCTCAGCCTTCTTGTACATCTGCCAGAT 27314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517534945029960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |