Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq555 192 7e-44 >seq555 Length=1693913 Score = 192 bits (212), Expect = 7e-44 Identities = 418/628 (67%), Gaps = 56/628 (9%) Strand=Plus/Minus Query 145690 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCG 145749 || ||||||| |||||| || || || |||| |||||| | ||| || || || Sbjct 977031 TCAACGTGGTCAGCGTAGACATGTGCATCGCCCATGACGTGCGTCAAGCTGCCAGGGACG 976972 Query 145750 AGGCC-CGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGG 145808 ||| | | || | |||| | ||||| |||||||| | |||||| || ||||||||||| Sbjct 976971 AGGTCACATGCGC-GGGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGG 976913 Query 145809 CACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC------ 145862 ||| || || ||||| || | || |||||||||||||| ||| || | ||| Sbjct 976912 CACGCCGAGGCCCATATCGCAGGACCGCTGGTACAGCTGACAGTGCAGGTGCCCCTTTGG 976853 Query 145863 ----------------------------GCCCGCC--------ACGTAGAACTG-GCACA 145885 || ||| ||||||||||| ||| | Sbjct 976852 CTTCTCTCCGTCAGCGGGTGCACCGCGGGCTCGCGGGTAGGAGACGTAGAACTGCGCAAA 976793 Query 145886 GGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGA 145945 | |||||| ||||| |||||||| |||||||| |||||||| ||| |||||| Sbjct 976792 C-ATGTGGCATGGCGGGAGGGCCATCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGGA 976734 Query 145946 CGAGCCTCCTGCTCTCG---GGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGT 146002 || | | || ||| || ||| |||| | || || | || |||||||| Sbjct 976733 GGA---TGCGGCGGTCGTACGGATTCGTCTTCAGCTTGTGGATGACCTCGGCGAGCTGGT 976677 Query 146003 CCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCC 146062 | |||||||| ||| |||||| ||||||| ||| || ||| |||| || ||||| | || Sbjct 976676 CGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCC 976617 Query 146063 ACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGG 146122 | ||||| |||||||| || || ||||| || || | |||| || || | | | Sbjct 976616 ATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCGCGGTGCGAGAGACCAACGCTGT 976557 Query 146123 CGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC--CCTCGCGGAGAGCTC 146180 ||||||| || || || |||||| ||||||||||||||||||| |||||| || | | Sbjct 976556 CGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCCGCCTCGCTCAGTG--C 976499 Query 146181 ATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAA 146240 |||| ||| ||| || |||||| |||||||| ||| ||| | | ||| Sbjct 976498 GAGGGAGGATGTGTTGCCCTCGACGAACCACAGCAGCTCAGCGATGACGGCGCGAAGGAA 976439 Query 146241 GACCCTCTTGGTGGTCAGCAGGGGGAAC 146268 ||| | ||| || || || ||||| ||| Sbjct 976438 GACGCGCTTCGTAGTAAGGAGGGGCAAC 976411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590064651793880