Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq132 109 5e-19 seq368 98.7 8e-16 >seq132 Length=157463 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||||||||||| || ||||| ||||| | | Sbjct 12581 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 12522 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| || || || |||| || | ||||||||| ||| Sbjct 12521 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGA 12462 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||||| || || | | ||| ||||| || ||| Sbjct 12461 ATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTCGACC 12402 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 || | ||| |||||||||||||| Sbjct 12401 TCAAGGGTGATGGTCTTGCCGGT 12379 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||||||||||| |||||||| || || | |||||| | ||||| Sbjct 12850 AGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCCGTCC 12791 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| || | || | | ||||||||| ||| | ||| || ||||| Sbjct 12790 TCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCC 12731 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | ||| |||||| | ||| || | ||| |||||| Sbjct 12730 TGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTC 12671 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTT 21171 |||||||| | ||| ||||| | || || Sbjct 12670 TTGCCGGTAAGCGTCTTGACGACTAGTT 12643 >seq368 Length=453445 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | ||||||||||| || ||||| ||||| | Sbjct 426389 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 426448 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| || || ||| | || || | ||||||||| ||| Sbjct 426449 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 426508 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| || || | |||| Sbjct 426509 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 426568 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| || |||| || ||||| || || ||||| Sbjct 426569 TCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 426615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422250724070252