Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1177 168 7e-37 seq368 134 1e-26 seq132 125 7e-24 seq996 120 3e-22 >seq1177 Length=83355 Score = 168 bits (186), Expect = 7e-37 Identities = 212/287 (74%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||||| ||||||| | || ||| Sbjct 27314 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTG 27255 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCT----TGAACGACAACGAGCGCCATTTCATCA 116750 |||||||| | | | ||||||| | | | | ||||| | ||| | |||||| Sbjct 27254 TCCAAGGATCTCCA-CGACTGGAA-CAATAAGATCAACGAGGATGAGAAGTACTTCATCT 27197 Query 116751 AGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGC 116810 |||| | || ||||| |||||||| |||||||| ||||| ||||| ||||||||| Sbjct 27196 CGCACATCCTCGCCTTCTTCGCCGCTTCTGACGGCATTGTCAATGAGAACTTGGTCGAGC 27137 Query 116811 GTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 | ||| ||||| ||||| ||||||| || |||||||| ||||| || ||| | Sbjct 27136 GCTTCAGCGGCGAGGTCCAGGTCCCCGAGGCCCGTTGCTTCTATGGCTTCCAAATCATGA 27077 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||| | ||||| || | || ||| ||||||||||| ||| Sbjct 27076 TGGAGAACATCCACTCCGAGACCTACTCGCTGCTCATCGACACCTAC 27030 Score = 161 bits (178), Expect = 1e-34 Identities = 312/455 (69%), Gaps = 4/455 (1%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGCCTTCGGCGAGCGC 117040 |||||||||| ||||| ||| ||||| || |||| | || |||||| | |||| Sbjct 26905 AGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGAT-GAGAAGTCCTCCTTCGCCCAGCGT 26847 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 || || |||||||| ||||| ||||| ||||||| || |||||| |||| || Sbjct 26846 CTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTC 26787 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||||||||| || || || |||||||| ||||| ||| ||||||||| ||||| | Sbjct 26786 TGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCGT 26727 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220 || |||||||| || |||||| ||||| | || | | || | | | || || Sbjct 26726 GATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTACTCTCACCTCAAGAACCGCCCC 26667 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 ||| | | | | ||| ||| || ||| || ||| || |||||| ||||| Sbjct 26666 AGCAAGCAGGTCATTGAGGACATCATCGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTG 26607 Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339 ||||| || ||||| |||| |||||| || | || | | | |||| ||| ||||| Sbjct 26606 ACCGAGGCTCTGCC-TTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACAT 26548 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 ||||| || |||||| | || || | | || | | | |||| |||||| | | Sbjct 26547 TGAGTTTGTTGCCGACCGCCTCTTGGTTGCTCTCGGCAATGACAAGGTCTACAAGTCTTC 26488 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434 |||||| | ||||| ||| | ||||||| ||| Sbjct 26487 CAACCCCTTTGACTTCATGGAGAACATCTCCCTGG 26453 >seq368 Length=453445 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || || |||||| | || || || | || Sbjct 426615 ATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 426556 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| |||||||||||| | |||||| Sbjct 426555 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 426496 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || ||||| || |||| ||||||||| |||||||||| Sbjct 426495 CAGCGCCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 426436 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || || | || ||||| || | || || Sbjct 426435 ATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGCCTGCGTGGTGG 426389 >seq132 Length=157463 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || || ||| | || |||||| | | Sbjct 12867 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 12926 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| ||||| |||||| | |||||| Sbjct 12927 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 12986 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || |||||||| || | |||||||| ||||||||| Sbjct 12987 CAGCGCCTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 13046 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || ||||| || || Sbjct 13047 ATCCAGAAGGAGTCTACCCTGCACCTTGT 13075 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| ||||| ||||||||| | || ||||| || |||| | | | | | ||||| Sbjct 12377 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGACAATGTCAAGT 12436 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 ||| || | ||||| |||||||| ||| | |||||||| || || || | ||| || | Sbjct 12437 CAAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTGATTTTCGCCGGAA 12496 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | ||||| || |||| |||||||| |||||||||||||||||||||| |||| || | Sbjct 12497 AGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTC 12556 Query 40892 A 40892 | Sbjct 12557 A 12557 Score = 123 bits (136), Expect = 3e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 40694 AAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA 40753 || || |||| || ||||| || ||||| ||||||||| | || || || | | || | Sbjct 12643 AACTAGTCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATA 12702 Query 40754 GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAAC 40813 | | | | ||||| ||| |||| |||||||||||||| ||| | |||||||| | Sbjct 12703 CCATCGACAATGTCAAGTCAAAGATTCAGGACAAAGAGGGCATTCCCCCTGACCAGCAGC 12762 Query 40814 GACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCC 40873 | | |||| ||| ||||| ||||| || |||| || ||||| ||| |||||||| | Sbjct 12763 GCTTGATCTTCGCAGGCAAGCAGCTTGAGGACGGACGGACCCTGTCCGATTACAACATTC 12822 Query 40874 AGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||| |||| || || | ||| |||| Sbjct 12823 AGAAGGAGTCCACCCTCCACTTGGTGCTGCG 12853 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || || || || | || ||||| | | Sbjct 13095 ATGCAAATTTTCGTCAAGACCTTGACTGGAAAGACGATTACACTAGAGGTCGAGTCTTCG 13154 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| ||||| || |||| ||||| |||||||| || | ||||| Sbjct 13155 GACACGATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCA 13213 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || ||| |||| || | |||||| | | || ||||| Sbjct 13214 GCAGCGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCACCTTGAGTGATTACAA 13273 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | ||||| ||||| || Sbjct 13274 CATCCAGAAGGAGTCGACGCTTCATCTTGT 13303 >seq996 Length=339164 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| | || ||||| || | |||| | Sbjct 161500 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 161441 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||||||| | |||||||| || | Sbjct 161440 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 161381 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || |||| ||||||||| ||||||||||||||||||| Sbjct 161380 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 161321 Query 40879 G 40879 | Sbjct 161320 G 161320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515208592924720