Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq273 484 6e-132 seq1177 140 3e-28 seq132 127 2e-24 seq368 89.7 5e-13 >seq273 Length=152475 Score = 484 bits (536), Expect = 6e-132 Identities = 1221/1844 (66%), Gaps = 30/1844 (2%) Strand=Plus/Minus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| || || ||||||||||||||||| || | |||||| || ||||| || Sbjct 73095 GTGCGCAGGTAGTACATGCCCGTCTTCAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTG 73036 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || |||| | ||||| | |||| |||||| ||| ||||| Sbjct 73035 GTTATCTTGCCCATGGTCGGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCGATG 72976 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324 || || || || ||||| ||||| | | | |||||| ||| || ||||| || ||| Sbjct 72975 AAGGCACCACGGTCGGCAGCCATCTGCACAACAGTACGCTGCGAGATCTCCCAAACAGTC 72916 Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTG 22384 |||||||| | ||| ||| || || ||| |||||| ||| ||||| | | Sbjct 72915 TTGTACAGGGCCTTGACCTCAGTAGGAATGTTGGGGATGTTCTGGATGGAACCGTTCTCG 72856 Query 22385 TGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACC 22444 ||||| || || || | |||| ||||| ||| ||| || | ||| || | Sbjct 72855 GCAATGATGCGGTTCTTCATGGCATCGGACCACAGACCCATGTCGACGAGATCCTTCAAG 72796 Query 22445 AGATGACGGTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGA 22503 || | |||| || || || ||||| || | ||||| | || || ||||| |||||||| Sbjct 72795 AGCCAAGGGTTGACAACCTGGAACTCACCAG-CAAGAACACGACGCTGGTAGATGTTGGA 72737 Query 22504 TGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCAT 22563 ||| | || || || | || ||||| |||| ||||| | ||| || |||||||| Sbjct 72736 GGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTGGCAGTCGGCAT 72677 Query 22564 CGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGA--GCATC 22621 ||||| | || || ||||| | | ||||||| ||| | ||| | ||||| Sbjct 72676 GGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTAATCTGCTCCTTCAAAGCATC 72617 Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCG 22681 ||||||||| ||||| || ||| | ||||| |||||| || || || | | ||| Sbjct 72616 --CCAGTCCCAGAGATCCGAGGGCTTGACATT---CCACATGTCATACTGGAGGATGCCC 72562 Query 22682 CGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAG 22741 || | ||| || |||||||| | ||| || || | | ||| || | ||| Sbjct 72561 TGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCAC 72503 Query 22742 CT-CGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG---GC 22797 | | | || ||| || || ||||||||||| |||||||| | ||| || Sbjct 72502 CGACATGGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGAGC 72443 Query 22798 GGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAAC 22857 ||| || || || | |||||||| | || ||| || || || | |||||| || Sbjct 72442 CTCGG-GAGACT--CGAAGGGCATACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGGAC 72386 Query 22858 GCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGAT 22913 || | |||||| || |||| || || || |||| ||| | | ||| | Sbjct 72385 ACCGAGACCGATGGGGCGGTGGCGCATGTTG----CTGTTGCGAGCCTCCTGAACAGGGT 72330 Query 22914 ACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNN 22973 | || ||||| ||||||||| ||| | | || | | || | Sbjct 72329 AGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACGACCTGGGTGACCTCGTGGA 72270 Query 22974 NNNNNTCAAAGTCGTAAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGG 23030 | |||||||| || ||| ||||| ||||||| || | ||||| ||||| Sbjct 72269 GCTTCTGGAAGTCGTAGACTCCCTCGTTGTAGTCAACAAAGGTGGGCAGGGCGAGCGAGG 72210 Query 23031 CAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGAT 23090 | || ||||| || || ||||| || | |||||| | ||| || || || || | Sbjct 72209 CCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAGTACTCGATAATCTCCGTGCAGAGGT 72150 Query 23091 TGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGT 23150 || | || ||||| | || |||||||||| || || ||| | |||||||| Sbjct 72149 TGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGT 72090 Query 23151 AGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCT 23210 |||||||| | || | || |||||| ||| | ||||| ||| || ||| | ||| Sbjct 72089 AGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCT 72030 Query 23211 GAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCA 23269 |||| | | ||| || ||| ||| | ||||||||| | |||||| || ||| Sbjct 72029 GAGCCTTCATG-GTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCA 71971 Query 23270 AATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCAC 23329 || || | ||||| |||||||||||||| || ||| | || ||||||||| |||| Sbjct 71970 AACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCATTCGTTGGGGCACATGAGAGTCCAG 71911 Query 23330 ATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGT 23389 | || || || | |||| || || || || ||||| || ||| ||| || Sbjct 71910 TCCCCATTCTTCTCCACCCTCTTCATGAAGAGGTCGGGAATCCAGAGGGCGAGGAAAAGG 71851 Query 23390 TCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACG 23449 || |||||||| |||||||| |||||| |||||| ||||||||| ||||| || || Sbjct 71850 TCACGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAAATCCAAGAAGTCGAAGACA 71791 Query 23450 TCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGA 23509 || || ||||| ||||| ||||||| ||| || || || || | ||| ||||| ||||| Sbjct 71790 TCGGCGTGCCAAGGCTCAAGGTAAATGGCGAAAGCACCGGGGCGCTTGTTGCCACCCTGG 71731 Query 23510 TCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCG 23569 |||||||| || || ||||||||| | || | ||||| || |||| ||||||||| | Sbjct 71730 TCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATAGGGACGACACCGTTGGAGGTA 71671 Query 23570 CCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATG 23629 ||| ||| || | | || || | || || | | ||| |||| || ||| ||| Sbjct 71670 CCGTTCGTGCCGGCAATATATGAGCCGGTGGCGCGGATGCGGTGGACGTTGAGACCAATG 71611 Query 23630 CCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATG 23689 || ||| || || || ||||| ||||| || || ||||| ||||| ||||| || Sbjct 71610 CCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATACCCTCAATA 71551 Query 23690 CTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCC 23749 |||||| || | |||| | ||| || || |||| || || | || ||| |||| Sbjct 71550 GAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCGGCG 71491 Query 23750 GAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCG 23809 ||| ||||| || |||||| || ||| | ||||||| || ||||| || ||| Sbjct 71490 TTGAAGAGTGTGGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTGTAGGTTTCG 71431 Query 23810 ATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGA 23869 ||| || |||| ||| || || ||||| | |||||| ||||| ||||||| || Sbjct 71430 ATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGG 71371 Query 23870 GGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAAT 23929 ||||||||| | | ||||| || |||| || ||||| | | || || || || Sbjct 71370 GGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAAGTCTTGAAG 71311 Query 23930 CCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || || | ||||| ||||| || || | || ||||| || Sbjct 71310 CCGAAGTATTGGTAGTTGAAGTCGCGGTCATAGACGATGGCAGA 71267 >seq1177 Length=83355 Score = 140 bits (154), Expect = 3e-28 Identities = 268/390 (69%), Gaps = 10/390 (3%) Strand=Plus/Minus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973 ||||||||| || ||| | | || ||||| | | | | || | |||||| || | Sbjct 26907 CAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCCCAGCG 26848 Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATT 58033 || | || ||||||||||| || ||||| ||||| || ||| || | || || Sbjct 26847 TCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTT 26788 Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093 ||| | ||||| || || || |||||||| ||||| || ||||||| |||| || || Sbjct 26787 CTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCG 26728 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153 || |||||||| || || || || || ||||| | ||||||||| |||| |||| Sbjct 26727 TGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTACTCTCAC---CTCAA-GAACC 26672 Query 58154 GACGCGGGATCGCA--TCTT---GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208 | | | | | ||| || | |||||| ||| ||| || ||| ||| || | ||| Sbjct 26671 GCCCCAGCA-AGCAGGTCATTGAGGACATCATCGTCGATGCTGTCAAGATTGAGCAGGAG 26613 Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268 || | ||||| || || || || ||||||| |||||| | ||||| || Sbjct 26612 TTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAG 26553 Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTG 58298 ||||||||||||||||||||| | || ||| Sbjct 26552 TACATTGAGTTTGTTGCCGACCGCCTCTTG 26523 >seq132 Length=157463 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| |||| || || ||||| || | || || || | || Sbjct 13095 ATGCAAATTTTCGTCAAGACCTTGACTGGAAAGACGATTACACTAGAGGTCGAGTCTTCG 13154 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || ||||||||| ||| | || ||||||||| Sbjct 13155 GACACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 13214 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || |||||||| || | || |||| ||||| ||| Sbjct 13215 CAGCGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCACCTTGAGTGATTACAAC 13274 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || ||||| |||||||| || ||| | ||| | || ||| Sbjct 13275 ATCCAGAAGGAGTCGACGCTTCATCTTGTCCTTCGTCTGCGTGGAGGT 13322 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || || ||| | || || ||| |||| Sbjct 12867 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 12926 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| || | || ||||||||| Sbjct 12927 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 12986 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| || || ||| ||||||| | || || || || ||| Sbjct 12987 CAGCGCCTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 13046 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || || || || ||| | || | || |||| Sbjct 13047 ATCCAGAAGGAGTCTACCCTGCACCTTGTCCTTCGCCTCCGTGGAGGTA 13095 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| || || ||||| || |||||| | || ||||| | || || | ||| Sbjct 12649 TCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCG 12708 Query 31263 AAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | | ||||| || ||| | |||||| || ||| | || || ||||||||||| | Sbjct 12709 ACAATGTCAAGTCAAAGATTCA-GGACAAAGAGGGCATTCCCCCTGACCAGCAGCGCTTG 12767 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || ||||| ||||| ||| | || ||| ||| || |||||| |||||||| || Sbjct 12768 ATCTTCGCAGGCAAGCAGCTTGAGGACGGACGGACCCTGTCCGATTACAACATTCAGAAG 12827 Query 31382 GAATCGACTCTTCATCTGGTACT 31404 || || || || || |||| || Sbjct 12828 GAGTCCACCCTCCACTTGGTGCT 12850 >seq368 Length=453445 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || || || || |||||| | || || || Sbjct 426620 CAATCATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACTATCACCCTTGAGGTGGAGT 426561 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | ||||| | || ||||||||| ||| | || || | Sbjct 426560 CTTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTG 426501 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || || ||||| || ||| | || ||| || | ||| | Sbjct 426500 ACCAGCAGCGCCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACT 426441 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || || || || ||||| |||| || | ||| | || |||| Sbjct 426440 ACAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGCCTGCGTGGTGGTA 426387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445757222784240