Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq555 107 2e-18
>seq555
Length=1693913
Score = 107 bits (118), Expect = 2e-18
Identities = 378/582 (65%), Gaps = 60/582 (10%)
Strand=Plus/Minus
Query 20930 ATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGT 20989
||||||||||| ||| || || || || |||| | |||| ||| || || |||
Sbjct 977032 ATCAACGTGGTCAGCGTAGACATGTGCATCGCCCATGACGTGCGTCAAG-CTGCCAGGGA 976974
Query 20990 C-AGGCC-CGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAAC 21047
| ||| | | || || | || |||| | |||||| || |||||||| |||||||| ||
Sbjct 976973 CGAGGTCACATG-CGCGGGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAAG 976915
Query 21048 GGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC---- 21103
|| || ||||||||||| ||| ||||| |||||||||||| ||| ||| | |||
Sbjct 976914 GGCACGCCGAGGCCCATATCGCAGGACCGCTGGTACAGCTGACAGTGCAGGTGCCCCTTT 976855
Query 21104 ---------CCG--AGC---------------------------CACGTAAAACTGACAC 21125
||| ||| ||||| ||||| | |
Sbjct 976854 GGCTTCTCTCCGTCAGCGGGTGCACCGCGGGCTCGCGGGTAGGAGACGTAGAACTG-CGC 976796
Query 21126 AAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACAT 21184
||| | ||| || || ||||| |||||| | |||||||||||||||||||||| |
Sbjct 976795 AAACATGTGGCATGGCGGGAGGGCCATCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAG 976736
Query 21185 AACGATGCGCCGATCGTGGGGCCGCCTGTTAA----TTAGATCCACCACGTAACGCAGCT 21240
| |||||| || |||| || | | || | | ||| ||| || || ||||
Sbjct 976735 GAGGATGCGGCGGTCGTACGGATTCGTCTTCAGCTTGTGGAT-GACCTCG--GCG-AGCT 976680
Query 21241 GGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTC 21300
|||| || ||||| ||| ||| | | | ||| | ||||| || ||||| ||||
Sbjct 976679 GGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTC 976620
Query 21301 TCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCG 21360
||| ||||| ||||| || || || || ||||| | ||||| | | || || ||
Sbjct 976619 GCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCAACTTCGCGGTGCGAG-AGACCAACG 976561
Query 21361 CCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACG-CCGCGGCGCGACAG 21418
| | | | || |||| || |||| ||||||| || || ||| |||| ||| |||
Sbjct 976560 CTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCCGCCTCGC-TCAG 976502
Query 21419 TTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTC 21460
| || |||| ||| |||| || |||||||||| |||
Sbjct 976501 TGCGAGGGAGGATGTGTTGCCCTCGACGAACCACAGCAGCTC 976460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427767413332560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |