Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq273 95.1 2e-14
seq1177 87.8 2e-12
>seq273
Length=152475
Score = 95.1 bits (104), Expect = 2e-14
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848
|||| ||| | || ||||||||||||| | || || | ||| || || |||||||||
Sbjct 73137 TCCTGGTCGACGGTGAACTGAATGGGAGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATG 73078
Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908
|| || || || ||||| |||| ||| |||||||| || |||| ||| | |
Sbjct 73077 CCCGTCTTCAGGCCGAGCTTCCAGCCGGCGAAATGCATGCTGGTTATCTTGCCCATGGTC 73018
Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968
|| || |||||||| || | |||||| || ||||||||||| || | ||| |||
Sbjct 73017 GGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCA 72958
Query 70969 GCCAT 70973
|||||
Sbjct 72957 GCCAT 72953
>seq1177
Length=83355
Score = 87.8 bits (96), Expect = 2e-12
Identities = 145/209 (69%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124
|| ||||| ||| ||| ||||||||||| | | || | |||||||| || || ||
Sbjct 26698 CAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGTTGGAGAAGGTCAGA 26757
Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184
|||||||| || |||||||| || ||||| || || || || || | || ||||||
Sbjct 26758 CCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAG 26817
Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT---GT 42241
|| || || || || || ||||||| || | || | | || | ||||
Sbjct 26818 ATACCCTCAACGGCGGCGAAGGCAACGAGACGCTGGGCGAAGGAGGACTTCTCATCGCTA 26877
Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTT 42270
|||||||| | ||||| |||||||||||
Sbjct 26878 ATCCACTTCAGGGCCCAGTCGGCCTTCTT 26906
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671125382921720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |