Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq132 127 5e-24
seq368 122 2e-22
>seq132
Length=157463
Score = 127 bits (140), Expect = 5e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | ||||| || ||||| || || |||||||| || || | ||| ||
Sbjct 13079 AAGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATC 13020
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| || || ||||| || ||||| || | ||| || || || || || || || || ||
Sbjct 13019 TTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTC 12960
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||| ||||| | || ||||| || | ||| || | ||| ||||| || ||||||||
Sbjct 12959 CTGGATCTTCGACTTGACATTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGT 12900
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| ||||| || || || || || ||||||||
Sbjct 12899 CTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 12867
Score = 100 bits (110), Expect = 7e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| || || || || || || | ||||| || || || || ||
Sbjct 12835 GTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCCGTCCTCAAGCTGCTTGCCT 12776
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | | ||| || ||||| || || || ||||| ||||||||||||| ||
Sbjct 12775 GCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGAATCTTTGACTTG 12716
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | |||||| || || ||||| || || || ||||| || ||||| ||
Sbjct 12715 ACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTC 12656
Query 104543 TTTAC 104547
|| ||
Sbjct 12655 TTGAC 12651
Score = 96.9 bits (106), Expect = 8e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||| | || || || ||||| || || || ||| | || | ||| ||
Sbjct 13307 AAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCATC 13248
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| | || || |||||||| || || | ||| || || ||||| || || || || ||
Sbjct 13247 CTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTC 13188
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||||||| | || || || || | || || || || |||||||||||||| ||
Sbjct 13187 CTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGT 13128
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| ||||| | || || || || || |||||
Sbjct 13127 CTTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 13095
>seq368
Length=453445
Score = 122 bits (134), Expect = 2e-22
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || || | ||||| || || || ||||||
Sbjct 426419 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCA 426478
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | ||| || ||||| || || || || || ||||| ||||| | ||
Sbjct 426479 GCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 426538
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| ||| || || ||||| || || ||||||||||| || || ||
Sbjct 426539 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTTAGGGTC 426598
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 426599 TTGACGAAGATCTGCAT 426615
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151374102975076
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |