Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq132 127 5e-24 seq368 122 2e-22 >seq132 Length=157463 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||||| || ||||| || || |||||||| || || | ||| || Sbjct 13079 AAGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATC 13020 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || ||||| || ||||| || | ||| || || || || || || || || || Sbjct 13019 TTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTC 12960 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| | || ||||| || | ||| || | ||| ||||| || |||||||| Sbjct 12959 CTGGATCTTCGACTTGACATTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGT 12900 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || || || |||||||| Sbjct 12899 CTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 12867 Score = 100 bits (110), Expect = 7e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || || || || || || | ||||| || || || || || Sbjct 12835 GTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCCGTCCTCAAGCTGCTTGCCT 12776 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || ||||| || || || ||||| ||||||||||||| || Sbjct 12775 GCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGAATCTTTGACTTG 12716 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| || || ||||| || || || ||||| || ||||| || Sbjct 12715 ACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTC 12656 Query 104543 TTTAC 104547 || || Sbjct 12655 TTGAC 12651 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || || ||||| || || || ||| | || | ||| || Sbjct 13307 AAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCATC 13248 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | || || |||||||| || || | ||| || || ||||| || || || || || Sbjct 13247 CTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTC 13188 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| | || || || || | || || || || |||||||||||||| || Sbjct 13187 CTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGT 13128 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| | || || || || || ||||| Sbjct 13127 CTTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 13095 >seq368 Length=453445 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | ||||| || || || |||||| Sbjct 426419 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCA 426478 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || ||||| || || || || || ||||| ||||| | || Sbjct 426479 GCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 426538 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| || || ||||| || || ||||||||||| || || || Sbjct 426539 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTTAGGGTC 426598 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 426599 TTGACGAAGATCTGCAT 426615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151374102975076