Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq831 104 4e-18
seq408 98.7 2e-16
>seq831
Length=576932
Score = 104 bits (114), Expect = 4e-18
Identities = 85/101 (84%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| ||| | | || |||||||| || || ||||||||||| |||||
Sbjct 544284 GCCAAGCGTCACCGCAAGATTT-TGCGTGATAACATTCAGGGTATCACCAAGCCCGCTAT 544342
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||| ||||| |||||||||||||| ||||||||| | ||||
Sbjct 544343 CCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 544383
>seq408
Length=62763
Score = 98.7 bits (108), Expect = 2e-16
Identities = 84/101 (83%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| || |||| ||| | | || || |||||||| || ||||||||||| |||||
Sbjct 35157 GCCAAGCGCCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 35215
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||||||||| ||||| |||||||| ||||||||| | ||||
Sbjct 35216 CCGTCGTCTCGCTCGCCGTGGTGGTGTCAAGCGTATTTCTG 35256
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79073694136371
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |