Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq273 370 3e-97
seq1177 91.5 4e-13
>seq273
Length=152475
Score = 370 bits (410), Expect = 3e-97
Identities = 1127/1722 (65%), Gaps = 32/1722 (2%)
Strand=Plus/Plus
Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513
|| ||||| ||| | |||||||| || |||||||| | || ||||| ||
Sbjct 71369 CCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTC 71428
Query 363514 ATTGAAACATATAAGCTTCTAA-GTGCTCGTGTATTCACGCACGCCACGCCAACAATGTA 363572
|| ||||| || || || | | || || | ||||| |||||| | || ||| | |
Sbjct 71429 ATCGAAACCTACAACCTGATGTCGAGCAAGT-TCTTCACTCACGCCTCTCCCACACTCTT 71487
Query 363573 CAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGA 363632
||| || || || | | | | ||| |||| |||||||| || | | |||||||| ||
Sbjct 71488 CAACGCCGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGA 71547
Query 363633 TTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGG 363692
|| || |||||||||| |||||| || |||| ||| || | || ||||||| || ||
Sbjct 71548 CTCTATTGAGGGTATCTATGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGG 71607
Query 363693 CGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACA 363750
|| |||||| | | || ||||| | || || || | | || ||| ||||||
Sbjct 71608 TGGCATTGGTCTCAACG-TCCACCGCATCCGCGCCACCGG-CTCATATATTGCCGGCACG 71665
Query 363751 GGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTAC 363810
|| ||| || || | || || ||||| ||||| || |||| ||||| | |||
Sbjct 71666 AACGGTACCTCCAACGGTGTCGTCCCTATGCTCCGTGTCTTCAACAACACTGCTCGCTAC 71725
Query 363811 GTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCAT 363870
|||||||||||||| |||||| || || || || || || || |||||| ||
Sbjct 71726 GTCGACCAGGGTGGCAACAAGCGCCCCGGTGCTTTCGCCATTTACCTTGAGCCTTGGCAC 71785
Query 363871 GCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCA 363930
|||||| | || || || | || | || || ||| || || ||||| | || ||
Sbjct 71786 GCCGATGTCTTCGACTTCTTGGATTTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCC 71845
Query 363931 CGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGT 363990
||||| || ||| || || ||| || | |||| || |||||| | |||||| |
Sbjct 71846 CGTGACCTTTTCCTCGCCCTCTGGATTCCCGACCTCTTCATGAAGAGGGTGGAGAAGAAT 71905
Query 363991 AAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGAC 364050
| | ||| | ||| | ||||| ||||||| || || || |||| | || ||
Sbjct 71906 GGGGACTGGACTCTCATGTGCCCCAACGAATGCCCTGGCCTGGCCGACTGCTACGGCGAG 71965
Query 364051 GACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCC 364110
|| | || || | ||||| ||||| || | ||| |||| ||| ||||| ||
Sbjct 71966 GAGTTTGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAGACCATGAAG 72025
Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170
|| |||||||| |||| ||||||| | || | |||| ||||| || | |||| |||
Sbjct 72026 GCTCAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGTAACCCCTTCATG 72085
Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230
| ||||| ||| | |||||||||| ||||||| || ||||||| || | || ||||
Sbjct 72086 CTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACTA-TCCGCAG 72144
Query 364231 -AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289
|||||| || || |||||||| || ||| ||| || || ||| || || || ||
Sbjct 72145 CTCCAACCTCTGCACGGAGATTATCGAGTACTGCGCGCCTGATGAGGTCGCTGTCTGCAA 72204
Query 364290 CCTTGCGTCGATCGCGCTTCCGGCGTTTGT------AAAAGATGGTACTTTTGACCACCA 364343
||| || ||| |||| || || | ||||| || || || | ||| |||
Sbjct 72205 CCTGGCCTCGCTCGCCCTGCCCACCTTTGTTGACTACAACGAGGGAGTCTACGACTTCCA 72264
Query 364344 GCATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCGACAAGGTTATCGACAAG 364401
| | || | || || ||| | || | | | |||| || ||| | ||||||
Sbjct 72265 GAAGCTCCACGAGGTCACCCAGGTCGTTGTCC--GCAACCTGAACAGAATCATCGACGTC 72322
Query 364402 AATTATTATCCAATTCCTGAAGC-CG----AGCGTTCTAATATGCGTCATCGCCCGATTG 364456
|| | || || ||| || || || ||| || ||||| || ||||| || |
Sbjct 72323 AACCACTACCCTGTTCAGGAGGCTCGCAACAGC-----AACATGCGCCACCGCCCCATCG 72377
Query 364457 GTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGC 364516
|||| ||||| ||||| || ||||| | || || ||| ||| | || || || |
Sbjct 72378 GTCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTATGCCCTTCGAGTCTC 72437
Query 364517 CTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTG 364576
| || ||||| | || || ||| ||||||| || || || || || || | ||
Sbjct 72438 CCGAGGCTCGCGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCCCTCACCA 72497
Query 364577 CTTCGTGTG-ATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTT 364635
||| ||| | |||| || |||| ||| || || ||||| |||||| ||
Sbjct 72498 TGTCG-GTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCCTGTT 72556
Query 364636 TCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGG 364695
|| ||||| | |||||| ||| | |||||||||| ||| || | | ||| |||||
Sbjct 72557 TCTCAGGGCATCCTCCAGTATGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGACTGG 72616
Query 364696 GATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCC 364754
||| | | | | | | ||||| |||| ||| |||||||| || | |||||
Sbjct 72617 GATGCTTTGAAGGAGC-AGATTAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCGCC 72675
Query 364755 CATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTAC 364814
|||||| || || || | |||||| | || |||||||||||||| || || | ||
Sbjct 72676 CATGCCGACTGCCAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTACAC 72735
Query 364815 AAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCT 364874
||| | || || || |||||| | || || || | ||| || || | ||
Sbjct 72736 CTCCAACATCTACCAGCGTCGTGTTCTTGCTGGTGAGTTCCAGGTTGTCAACCCTTGGCT 72795
Query 364875 AGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGC 364934
| |||||||| |||| || |||||| || |||||||||| ||||| ||
Sbjct 72796 CTTGAAGGATCTCGTCGACATGGGTCTGTGGTCCGATGCCATGAAGAACCGCATCATTGC 72855
Query 364935 CGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAA 364994
|| || ||||| | |||||||| || |||| || | ||| | | |||||
Sbjct 72856 CGAGAACGGTTCCATCCAGAACATCCCCAACATTCCTACTGAGGTCAAGGCCCTGTACAA 72915
Query 364995 AACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTT 365054
|| || ||||| || || ||| ||| | | | ||||| ||||| || ||||| ||
Sbjct 72916 GACTGTTTGGGAGATCTCGCAGCGTACTGTTGTGCAGATGGCTGCCGACCGTGGTGCCTT 72975
Query 365055 TATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTAC 365114
||| ||| |||||| | ||| | ||||| | || ||| | |||| | ||
Sbjct 72976 CATCGACCAGTCGCAGTCGCTCAACATTCACATGAAGGACCCGACCATGGGCAAGATAAC 73035
Query 365115 ATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
|||||||||| ||| ||||| ||| || ||||| ||
Sbjct 73036 CAGCATGCATTTCGCCGGCTGGAAGCTCGGCCTGAAGACGGG 73077
>seq1177
Length=83355
Score = 91.5 bits (100), Expect = 4e-13
Identities = 147/209 (70%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGA-ACGT--TCATTCGCGGAACGT 22494
|| ||||| || ||||| ||||| ||||| | | |||| | || || ||||| | |||
Sbjct 26906 AAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCCCAGCGT 26847
Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554
|| |||| || || | ||||| || || ||||| || || || | |||||
Sbjct 26846 CTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTC 26787
Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614
||||| || || |||| ||||||| ||||| || || || || ||| | || ||
Sbjct 26786 TGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCGT 26727
Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTG 22643
|||||||||||||| ||||| || || ||
Sbjct 26726 GATGAGGGTCTTCACACCGACTTCGCCTG 26698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303326096387954
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |