Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq132 143 3e-29
seq368 129 6e-25
seq996 113 4e-20
seq1177 86.0 6e-12
>seq132
Length=157463
Score = 143 bits (158), Expect = 3e-29
Identities = 164/218 (75%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||||||||| || || | ||| |||||||| ||||||||||||||| |
Sbjct 12865 CCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 12806
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || |||||| ||||||||||||||| |||| || ||||||||||| || ||
Sbjct 12805 AGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGA 12746
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|| || |||||||| ||| | | || ||||| | || | ||||| | ||||| |
Sbjct 12745 ATGCCCTCTTTGTC-CTGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAAC 12687
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
|| | ||| | ||| || ||||| || || || ||||
Sbjct 12686 CTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGACGA 12649
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || |||| ||| || || | ||| | ||||||||||| || ||||||||||| |||
Sbjct 13321 CCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTC 13262
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| | |||||| || || |||| | |||||||||||| |||||
Sbjct 13261 AAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGA 13202
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| || ||| ||||| | || | || || | |||||||
Sbjct 13201 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACC 13142
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | |||| || || || || | || || |||||||| |||||
Sbjct 13141 TCTAGTGTAATCGTCTTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 13095
Score = 109 bits (120), Expect = 5e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | || || || || || | ||| |||||||| || |||||||| ||| |
Sbjct 12581 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 12522
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| |||||||| || ||| | || | ||||||||||| || ||
Sbjct 12521 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGA 12462
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | ||||||| ||||||||
Sbjct 12461 ATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTCGACC 12402
Query 131188 TCGACGGTAACGGTTTTACCGGT 131210
|| | ||| | ||| || |||||
Sbjct 12401 TCAAGGGTGATGGTCTTGCCGGT 12379
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096
||| |||||||| || |||||||| || || |||||| || || |||||||| ||
Sbjct 13064 GGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTTCC 13005
Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156
||| | || | ||||||||||| || ||||| || || ||||| ||| ||| |||
Sbjct 13004 GGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTT 12945
Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216
|| | || | || || | || |||| || | ||||| || || || || || ||
Sbjct 12944 GACATTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGT 12885
Query 131217 TTTTACGAAAATCTGCAT 131234
|| ||||| ||||||||
Sbjct 12884 CTTGACGAAGATCTGCAT 12867
>seq368
Length=453445
Score = 129 bits (142), Expect = 6e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||||| || || || | ||| |||||||| || |||||||| |||
Sbjct 426389 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 426448
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| |||||||| || || |||| | ||||||||||| || |||
Sbjct 426449 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 426508
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || |||| ||||| |
Sbjct 426509 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 426568
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236
|| | ||| | || ||||| ||||| || || ||||| ||||||||||
Sbjct 426569 TCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATGA 426617
>seq996
Length=339164
Score = 113 bits (124), Expect = 4e-20
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| || |||||||| ||| | |||||| |||||| ||||||||||| ||| |||
Sbjct 161320 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 161379
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| || ||||||||||| || ||||| || || ||||| ||| || ||||| | |
Sbjct 161380 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 161439
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | || || | |||||||| || | ||||| ||| ||||| || || || || ||||
Sbjct 161440 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 161499
Query 131225 AA 131226
||
Sbjct 161500 AA 161501
>seq1177
Length=83355
Score = 86.0 bits (94), Expect = 6e-12
Identities = 343/520 (66%), Gaps = 25/520 (5%)
Strand=Plus/Minus
Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAAC-AGCAGCACCGCGAC 46145
|| ||| | |||||||| |||||||||| |||||||||| | | | || | | |
Sbjct 26918 CCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAAGTCCTCC 26859
Query 46146 TTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTT 46205
|| |||| ||||| | || ||||| || || ||||| |||| || || ||
Sbjct 26858 TT-CGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTT 26800
Query 46206 TGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACG 46264
||| ||||||| | |||| || | || | | |||||||| ||||| || |||||
Sbjct 26799 CGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTT-ATGCCCGGTCTGACCTTCTCCAACG 26741
Query 46265 AGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTC 46324
||||||| || || || ||||| || || || ||||| || || ||| || || |||
Sbjct 26740 AGCTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCT---ACTCTC 26684
Query 46325 GCGTGCACGACAAGCTTGCGCCCGACACC--GT-GCTGAG--CATGTTCAAGGAGGCGGT 46379
| | | | || | || || | | | || |||| ||| || || || ||
Sbjct 26683 AC---CTCAAGAACC--GCCCCAGCAAGCAGGTCATTGAGGACATCATCGTCGATGCTGT 26629
Query 46380 GGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGC 46439
|||||| ||||||| | || | || ||||| || ||||| ||||||||| |
Sbjct 26628 CAAGATTGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTC 26569
Query 46440 ACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-TCACC 46498
| ||| | ||||| |||||||| || ||||| || || | | ||| || |
Sbjct 26568 CAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCT-CTTG-GTTGCTCTCGGC 26511
Query 46499 A--GCCGAAGCATTTTCACG-CGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGG 46555
| | | ||| | | || | | ||| || ||||| || ||| | |||||||||||||
Sbjct 26510 AATGAC-AAG-GTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGG 26453
Query 46556 AGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595
||||| || || || || || ||||| || | ||| ||
Sbjct 26452 GCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTA 26413
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472003082436480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |