Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1073 136 3e-27 seq1001 125 5e-24 seq322 89.7 3e-13 >seq1073 Length=767 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 158 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 99 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 98 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 64 >seq1001 Length=215142 Score = 125 bits (138), Expect = 5e-24 Identities = 204/294 (69%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253 |||||| ||||| || ||||| ||| | ||| | ||||| ||||||| ||||| || Sbjct 189059 GGACGCTTTCTATCGTTACAAGATGGAGAAGATCGTCACCAAGATCGAGGGCAAGGGCAA 189000 Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313 ||| || || ||||| | |||||| || || ||| || | |||| || || | Sbjct 188999 CGGCATCAAGACCGTTGTCGTCAACCTGAGCAGCGTTGCTCAGTCCCTCGCCCGTCCCGG 188940 Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 | |||| | || || ||||| | ||| || || || ||||| | |||| | | Sbjct 188939 CGCCTATGTCATCAAGTACTTCGGCTTCGAGCTCGGTGCCCAGACCAACGTTGACCCCGC 188880 Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433 |||| |||| ||| | ||||| || || ||| | ||||||||||||||| || || Sbjct 188879 CGACGACCGCTGGATCATCAACGGCTCCCACAACGCCGCCAAGCTGCAGGACCACCTCGA 188820 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 |||||| || ||||||||| || || | | ||| | ||||| |||||||| Sbjct 188819 CGGCTTCATCAACAAGTTTGTCCTCTGCAAGAAGTGCAAGAACCCCGAGACCGA 188766 >seq322 Length=221078 Score = 89.7 bits (98), Expect = 3e-13 Identities = 75/91 (82%), Gaps = 6/91 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 ||||| || |||||||||||| |||||||| ||||||||||| | || |||||||| Sbjct 192087 AAGCCTGTGCCCTTGGCTGTGATTTCGCTAAATAGTAGATAGAAGCAGTGGGAATCTCGT 192146 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATG 25987 | ||| |||| |||||||||||| |||||| Sbjct 192147 TGGTCCATTCAGGCGCGTCACTAA-TAGATG 192176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334940476667657