Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq368 172 1e-37 seq132 170 4e-37 seq1022 138 2e-27 seq1177 134 3e-26 seq227 104 4e-17 seq947 84.2 4e-11 >seq368 Length=453445 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || |||||||| || |||||||| || |||||| Sbjct 426389 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 426448 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || || | || ||||| || || Sbjct 426449 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 426508 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 426509 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 426568 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || ||||| |||||||||||||| |||||||| || Sbjct 426569 TCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATGAT 426618 >seq132 Length=157463 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || ||||| | || | ||| || || ||||| || |||||||| || || || Sbjct 13093 CCTCCACGGAGGCGAAGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 13034 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| || || | || |||||||| || Sbjct 13033 AGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGG 12974 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | |||||| ||||||||||||| ||||| || Sbjct 12973 ATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCTGACGATTCGACC 12914 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || || ||||||||||||||||| |||||||| Sbjct 12913 TCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 12867 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | || | || ||||| ||||| || |||||||| ||||| Sbjct 13321 CCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTC 13262 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || |||||||| || || || || || | || |||||||| ||| Sbjct 13261 AAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGA 13202 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||||||| || || ||||| | || || || Sbjct 13201 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACC 13142 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || ||||| || | |||||||||||| || ||||| Sbjct 13141 TCTAGTGTAATCGTCTTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 13095 >seq1022 Length=355685 Score = 138 bits (152), Expect = 2e-27 Identities = 661/1036 (64%), Gaps = 40/1036 (4%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| ||||||| ||||||||||||| || || ||| |||||| Sbjct 312968 CGCCACTGGATGTACTCAGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAAGCG 313027 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 313028 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 313087 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 ||| || |||||||| |||||||| |||| |||||| ||||| ||||| ||||| Sbjct 313088 ACGAGCTCACCAGTGAGGACGTTGATGAGGGTAGACTTGCCGGCACCGTTGGGACCAATG 313147 Query 225161 ACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGG-- 225216 || | || ||||| || | ||| ||| | | || ||| ||||| || Sbjct 313148 ACCGCGATACGGGAGCCGAGAGAGCA--CTGGAAAGAAATGTC-CTG--GATCTGGGGCT 313202 Query 225217 -GCCAGTTT---GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGGT 225266 || || |||| |||| || | ||||||| |||||| | Sbjct 313203 TGCTGGTACCGGGGTACTGGAAGGACATCTTGCTGGCACGCAG------GATGGCCTTGG 313256 Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGT 225326 |||||| | | |||||| ||||| |||||||||||||| ||| || | | || Sbjct 313257 CCTTGGTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGAGAACTCCATCTCGGAGT 313316 Query 225327 CCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTC 225386 | | || |||||||| || || |||| ||| ||||| | |||||| | Sbjct 313317 CGCTGAGCTCGTAGTAGGACTTGGCAGCGGGGTTCTTCTTGACGAACTCCTTCAGGTTAC 313376 Query 225387 CGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCG 225445 | ||| | ||||||||| | || |||| || || || ||| | ||| || | Sbjct 313377 CACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGACGATGTGCTG-GCAGACGTTG 313432 Query 225446 TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGAG 225504 || |||||| ||||||||||||| || |||||||| | || | | || | | ||| Sbjct 313433 TCGAGGAAGGCAGAGTCGTGGGAGACGATGATGGAAGTGCAGG---GGGAGTTC-TGGAG 313488 Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564 || | |||||| ||||| | ||||||| |||||| || || ||||| ||||| Sbjct 313489 GTACTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTGGTGGGCTCGTCGAGAAG 313548 Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 |||||| || | | || || || || | || |||||||| ||||| || || Sbjct 313549 CAGGATATCGGGGGCCTCGAAGACAGCACGGCACAAAGCGAGCTTCATCTTCCAACCACC 313608 Query 225625 GGACAGGGAGCCGATTGAAACAGAGTGCTTAGCT-TCGTCAAAGCCGTACTCCAGGAGCG 225683 || |||| ||| | | | | | ||| ||| ||||||| |||| ||| Sbjct 313609 AGAGAGGGCAGAGATCTCACCCTTGACCAT-GCTGTCGGTAAAGCCGAACTCGTTCAGCT 313667 Query 225684 T---CTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGT 225740 | || || | || || || | | | ||| | | | | | | | Sbjct 313668 TGGCCTCGACGTCGGCCTGGGAAGTCTCGACACCAGCATCCTGGAGCTTCTTCATGGTCC 313727 Query 225741 AATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCC 225800 | || |||||| || | | ||| | ||||| |||||| || ||| | || ||| Sbjct 313728 ACTCGATGGTGGTCATCTCAGTGTCAGCAGAGTCAAGGTCGTGCTCGACGAAGACGGTCT 313787 Query 225801 GGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGG 225860 || || || | |||||| ||||| | ||| | || || || || | || | Sbjct 313788 TGACCTCGGACTGCTTGGGGAAACCCTCAACCTGCTCGTTGTTGATGGCGCGCATGAGAG 313847 Query 225861 TACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGA 225920 | |||||| | |||||||||||| || ||||| | | || ||||||| || Sbjct 313848 TGGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGACGGA 313907 Query 225921 GGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACA 225980 || | || ||| || ||||||||| |||| |||||||| ||||| ||| | ||| | Sbjct 313908 GGTGAGTCTGGTTGAGCAGGATCTTGGCACCGTAGGCAAGAGAGAAGGTGCAGTTGCAAA 313967 Query 225981 GGTCCTCACCCTCCTC 225996 ||||||| |||||||| Sbjct 313968 GGTCCTCGCCCTCCTC 313983 >seq1177 Length=83355 Score = 134 bits (148), Expect = 3e-26 Identities = 321/479 (67%), Gaps = 16/479 (3%) Strand=Plus/Plus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||||||||| || | || || ||| |||||||||| |||||| Sbjct 26392 TTCATGACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCG 26451 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCC----AAACTGCTTGGG 10048 | ||||| ||| |||||||||||||||||||| | | | | | || |||| Sbjct 26452 CCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGT--TGGAAGACTTGTAGAC--CTTGTC 26507 Query 10049 GTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTC 10108 | ||||| || || | |||||| || || ||||| |||||||| ||||||||| Sbjct 26508 ATTGCCGAGAGCAACCAAGAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTT 26567 Query 10109 CGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGC 10168 ||||||||||| | || ||| || | || ||| | ||| |||| || | Sbjct 26568 GGAGTTCATGCCGAGCAGAGCGCAAGGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTT 26627 Query 10169 GACCGCTTCCTCGACGATG--CTC-TTTACC-ACGTCAAGGGACAGCTTGTTCTCGAGCT 10224 ||| || || ||| |||| ||| | ||| | | ||| | ||||| ||| | Sbjct 26628 GACAGCATCGACGATGATGTCCTCAATGACCTGCTTGCTGGGGC----GGTTCTTGAGGT 26683 Query 10225 TCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGT 10284 || || ||||| | || | ||| || ||||| || || ||| | ||||| Sbjct 26684 GAGAGTAGAGGAGGCAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGT 26743 Query 10285 TGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACG 10344 |||| || |||||||||||| || || || || |||||||| |||| | ||| | Sbjct 26744 TGGAGAAGGTCAGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGG 26803 Query 10345 ACCCGGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAG 10403 ||| ||| | | |||||| ||| | |||| ||||| |||| ||||||||| Sbjct 26804 CACCGCTGAAGAAGATACCCTCAACGGCGGCGAAGGCAACGAGACGCTGGGCGAAGGAG 26862 >seq227 Length=151174 Score = 104 bits (114), Expect = 4e-17 Identities = 143/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGA---TGGACGACACGTTCGTCAGGCCCTT 225501 ||| ||||||||||||||||| || || || | ||| | || || || ||| Sbjct 92352 GTCGAGGAAGCCAGAGTCGTGAGAAACGATCAAACTGGTAATCTCGGG-GT--GGGTCTT 92408 Query 225502 GAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAG 225561 ||||| || |||||| || | |||| || |||| |||||| ||||||||||| || Sbjct 92409 GAGGTAGGTCTCGAGCCAGGCAATGTTGGCAACATCCAAGTGGTTGGTAGGTTCGTCGAG 92468 Query 225562 AAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCC 225621 ||||||| ||| || | |||| ||||| || | |||| || |||||| ||||| || Sbjct 92469 CAGCAGGACGTCGGCGCCCTTGAGCATGGCACGGGCCAGAGCCAACTTCATCTTCCATCC 92528 Query 225622 CCCGGACAGGGAGCCGA 225638 || ||||| ||||||| Sbjct 92529 ACCAGACAGAGAGCCGA 92545 >seq947 Length=24369 Score = 84.2 bits (92), Expect = 4e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 |||||| |||||||| || | ||| | ||||||| ||||||||||||| ||||| || Sbjct 18631 AATGCCCTCCTTGTCCTGGACCTTGGACTTGACGTTGTCGATGGTGTCTGACGATTCGAC 18690 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTG 68447 || | ||||||||| || || ||||| |||||| Sbjct 18691 CTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTG 18724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921603426098840