Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq368 172 1e-37
seq132 170 4e-37
seq1022 138 2e-27
seq1177 134 3e-26
seq227 104 4e-17
seq947 84.2 4e-11
>seq368
Length=453445
Score = 172 bits (190), Expect = 1e-37
Identities = 176/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| |||||||| || |||||||| || |||||||| || ||||||
Sbjct 426389 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 426448
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || || || || || | || ||||| || ||
Sbjct 426449 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 426508
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | |||||| ||||||||||| | || || ||
Sbjct 426509 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 426568
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464
|| | |||||| || || ||||| |||||||||||||| |||||||| ||
Sbjct 426569 TCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATGAT 426618
>seq132
Length=157463
Score = 170 bits (188), Expect = 4e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || ||||| | || | ||| || || ||||| || |||||||| || || ||
Sbjct 13093 CCTCCACGGAGGCGAAGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 13034
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | |||||| |||||||| || || | || |||||||| ||
Sbjct 13033 AGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGG 12974
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| | |||||| ||||||||||||| ||||| ||
Sbjct 12973 ATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCTGACGATTCGACC 12914
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||| || || || || ||||||||||||||||| ||||||||
Sbjct 12913 TCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 12867
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || || || | || | || ||||| ||||| || |||||||| |||||
Sbjct 13321 CCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTC 13262
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | ||||| || |||||||| || || || || || | || |||||||| |||
Sbjct 13261 AAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGA 13202
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | ||||||| || || ||||| | || || ||
Sbjct 13201 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACC 13142
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | || || || ||||| || | |||||||||||| || |||||
Sbjct 13141 TCTAGTGTAATCGTCTTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 13095
>seq1022
Length=355685
Score = 138 bits (152), Expect = 2e-27
Identities = 661/1036 (64%), Gaps = 40/1036 (4%)
Strand=Plus/Plus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| ||||||| ||||||||||||| || || ||| ||||||
Sbjct 312968 CGCCACTGGATGTACTCAGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAAGCG 313027
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100
||||| | ||| || || || ||||| |||| | | ||| | || ||
Sbjct 313028 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 313087
Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160
||| || |||||||| |||||||| |||| |||||| ||||| ||||| |||||
Sbjct 313088 ACGAGCTCACCAGTGAGGACGTTGATGAGGGTAGACTTGCCGGCACCGTTGGGACCAATG 313147
Query 225161 ACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGG-- 225216
|| | || ||||| || | ||| ||| | | || ||| ||||| ||
Sbjct 313148 ACCGCGATACGGGAGCCGAGAGAGCA--CTGGAAAGAAATGTC-CTG--GATCTGGGGCT 313202
Query 225217 -GCCAGTTT---GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGGT 225266
|| || |||| |||| || | ||||||| |||||| |
Sbjct 313203 TGCTGGTACCGGGGTACTGGAAGGACATCTTGCTGGCACGCAG------GATGGCCTTGG 313256
Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGT 225326
|||||| | | |||||| ||||| |||||||||||||| ||| || | | ||
Sbjct 313257 CCTTGGTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGAGAACTCCATCTCGGAGT 313316
Query 225327 CCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTC 225386
| | || |||||||| || || |||| ||| ||||| | |||||| |
Sbjct 313317 CGCTGAGCTCGTAGTAGGACTTGGCAGCGGGGTTCTTCTTGACGAACTCCTTCAGGTTAC 313376
Query 225387 CGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCG 225445
| ||| | ||||||||| | || |||| || || || ||| | ||| || |
Sbjct 313377 CACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGACGATGTGCTG-GCAGACGTTG 313432
Query 225446 TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGAG 225504
|| |||||| ||||||||||||| || |||||||| | || | | || | | |||
Sbjct 313433 TCGAGGAAGGCAGAGTCGTGGGAGACGATGATGGAAGTGCAGG---GGGAGTTC-TGGAG 313488
Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564
|| | |||||| ||||| | ||||||| |||||| || || ||||| |||||
Sbjct 313489 GTACTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTGGTGGGCTCGTCGAGAAG 313548
Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624
|||||| || | | || || || || | || |||||||| ||||| || ||
Sbjct 313549 CAGGATATCGGGGGCCTCGAAGACAGCACGGCACAAAGCGAGCTTCATCTTCCAACCACC 313608
Query 225625 GGACAGGGAGCCGATTGAAACAGAGTGCTTAGCT-TCGTCAAAGCCGTACTCCAGGAGCG 225683
|| |||| ||| | | | | | ||| ||| ||||||| |||| |||
Sbjct 313609 AGAGAGGGCAGAGATCTCACCCTTGACCAT-GCTGTCGGTAAAGCCGAACTCGTTCAGCT 313667
Query 225684 T---CTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGT 225740
| || || | || || || | | | ||| | | | | | | |
Sbjct 313668 TGGCCTCGACGTCGGCCTGGGAAGTCTCGACACCAGCATCCTGGAGCTTCTTCATGGTCC 313727
Query 225741 AATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCC 225800
| || |||||| || | | ||| | ||||| |||||| || ||| | || |||
Sbjct 313728 ACTCGATGGTGGTCATCTCAGTGTCAGCAGAGTCAAGGTCGTGCTCGACGAAGACGGTCT 313787
Query 225801 GGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGG 225860
|| || || | |||||| ||||| | ||| | || || || || | || |
Sbjct 313788 TGACCTCGGACTGCTTGGGGAAACCCTCAACCTGCTCGTTGTTGATGGCGCGCATGAGAG 313847
Query 225861 TACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGA 225920
| |||||| | |||||||||||| || ||||| | | || ||||||| ||
Sbjct 313848 TGGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGACGGA 313907
Query 225921 GGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACA 225980
|| | || ||| || ||||||||| |||| |||||||| ||||| ||| | ||| |
Sbjct 313908 GGTGAGTCTGGTTGAGCAGGATCTTGGCACCGTAGGCAAGAGAGAAGGTGCAGTTGCAAA 313967
Query 225981 GGTCCTCACCCTCCTC 225996
||||||| ||||||||
Sbjct 313968 GGTCCTCGCCCTCCTC 313983
>seq1177
Length=83355
Score = 134 bits (148), Expect = 3e-26
Identities = 321/479 (67%), Gaps = 16/479 (3%)
Strand=Plus/Plus
Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992
|||||||| || ||||||||||| || | || || ||| |||||||||| ||||||
Sbjct 26392 TTCATGACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCG 26451
Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCC----AAACTGCTTGGG 10048
| ||||| ||| |||||||||||||||||||| | | | | | || ||||
Sbjct 26452 CCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGT--TGGAAGACTTGTAGAC--CTTGTC 26507
Query 10049 GTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTC 10108
| ||||| || || | |||||| || || ||||| |||||||| |||||||||
Sbjct 26508 ATTGCCGAGAGCAACCAAGAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTT 26567
Query 10109 CGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGC 10168
||||||||||| | || ||| || | || ||| | ||| |||| || |
Sbjct 26568 GGAGTTCATGCCGAGCAGAGCGCAAGGCAGAGCCTCGGTCAGGAACTCCTGCTCAATCTT 26627
Query 10169 GACCGCTTCCTCGACGATG--CTC-TTTACC-ACGTCAAGGGACAGCTTGTTCTCGAGCT 10224
||| || || ||| |||| ||| | ||| | | ||| | ||||| ||| |
Sbjct 26628 GACAGCATCGACGATGATGTCCTCAATGACCTGCTTGCTGGGGC----GGTTCTTGAGGT 26683
Query 10225 TCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGT 10284
|| || ||||| | || | ||| || ||||| || || ||| | |||||
Sbjct 26684 GAGAGTAGAGGAGGCAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATCAGCTCGT 26743
Query 10285 TGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACG 10344
|||| || |||||||||||| || || || || |||||||| |||| | ||| |
Sbjct 26744 TGGAGAAGGTCAGACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGG 26803
Query 10345 ACCCGGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAG 10403
||| ||| | | |||||| ||| | |||| ||||| |||| |||||||||
Sbjct 26804 CACCGCTGAAGAAGATACCCTCAACGGCGGCGAAGGCAACGAGACGCTGGGCGAAGGAG 26862
>seq227
Length=151174
Score = 104 bits (114), Expect = 4e-17
Identities = 143/197 (73%), Gaps = 6/197 (3%)
Strand=Plus/Plus
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGA---TGGACGACACGTTCGTCAGGCCCTT 225501
||| ||||||||||||||||| || || || | ||| | || || || |||
Sbjct 92352 GTCGAGGAAGCCAGAGTCGTGAGAAACGATCAAACTGGTAATCTCGGG-GT--GGGTCTT 92408
Query 225502 GAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAG 225561
||||| || |||||| || | |||| || |||| |||||| ||||||||||| ||
Sbjct 92409 GAGGTAGGTCTCGAGCCAGGCAATGTTGGCAACATCCAAGTGGTTGGTAGGTTCGTCGAG 92468
Query 225562 AAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCC 225621
||||||| ||| || | |||| ||||| || | |||| || |||||| ||||| ||
Sbjct 92469 CAGCAGGACGTCGGCGCCCTTGAGCATGGCACGGGCCAGAGCCAACTTCATCTTCCATCC 92528
Query 225622 CCCGGACAGGGAGCCGA 225638
|| ||||| |||||||
Sbjct 92529 ACCAGACAGAGAGCCGA 92545
>seq947
Length=24369
Score = 84.2 bits (92), Expect = 4e-11
Identities = 75/94 (80%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413
|||||| |||||||| || | ||| | ||||||| ||||||||||||| ||||| ||
Sbjct 18631 AATGCCCTCCTTGTCCTGGACCTTGGACTTGACGTTGTCGATGGTGTCTGACGATTCGAC 18690
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTG 68447
|| | ||||||||| || || ||||| ||||||
Sbjct 18691 CTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTG 18724
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921603426098840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |