Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq368 109 6e-19
seq132 105 7e-18
>seq368
Length=453445
Score = 109 bits (120), Expect = 6e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||| ||||| || | ||| |||||| || || ||||| || | || || || ||
Sbjct 426401 CGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 426460
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || |||||||| ||||| || || || ||||||||||| | || | || |||||||
Sbjct 426461 TCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 426520
Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173
||| ||| || |||| | | | |||||| || ||||| || | |||||
Sbjct 426521 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATA 426580
Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || |||||||| ||||| || ||||| |||||
Sbjct 426581 GTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 426615
>seq132
Length=157463
Score = 105 bits (116), Expect = 7e-18
Identities = 148/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||| |||||| || | ||| |||||| ||||| |||||||| | ||| ||||| |
Sbjct 12854 ACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAGGGTCCGTCC 12795
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || |||||||| || ||||| || | ||||||||||| | || | || ||| ||
Sbjct 12794 GTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTT 12735
Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
|||| ||| | |||| |||| | | | || || || || || || | ||||
Sbjct 12734 GTCC-TGAATCTTTGACTTGACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGA 12676
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTAC 42196
|||| ||||| || |||||||| ||
Sbjct 12675 TGGTCTTGCCGGTAAGCGTCTTGAC 12651
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| |||| ||| || || | || || |||||||| || |||||
Sbjct 13058 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAA 12999
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || ||||||||||||| || | | |||||||||| ||| || |||| |
Sbjct 12998 AATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTGACATT 12939
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | ||||| |||||| || || | || || || ||||| || || ||||| ||
Sbjct 12938 GTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGAC 12879
Query 42197 AAAGATTTGCAT 42208
||||| |||||
Sbjct 12878 GAAGATCTGCAT 12867
Score = 87.8 bits (96), Expect = 2e-12
Identities = 139/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||||||| || || || | || || | |||||||||||| ||
Sbjct 13286 CTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCATCCTCCAACTGCTTACCAGCAAA 13227
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|| || ||||||||||||| || | || |||||||||| ||| | || | |||| ||
Sbjct 13226 GATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC-TGAATCTTCGACTTGA-CG 13169
Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194
| | | | |||||| || || || || | || || || || || || | |||||
Sbjct 13168 TTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGTCTTTCCAGTCAAGGTCTTG 13109
Query 42195 ACAAAGATTTGCAT 42208
|| || ||||||||
Sbjct 13108 ACGAAAATTTGCAT 13095
Score = 86.0 bits (94), Expect = 7e-12
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||| || | ||| |||||| || || ||||| || | ||| || || |||| ||
Sbjct 12563 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCA 12504
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
|||||||| || ||||| || || ||||||||||| | || | || |||||||||| |
Sbjct 12503 AGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGG 12444
Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179
|| ||| |||| | | | || ||| || || || || | |||||||| |||
Sbjct 12443 ATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTG 12384
Query 42180 CCCGT 42184
|| ||
Sbjct 12383 CCGGT 12379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543201616606480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |