Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq1177 104 2e-17
seq368 104 2e-17
>seq1177
Length=83355
Score = 104 bits (114), Expect = 2e-17
Identities = 340/524 (65%), Gaps = 27/524 (5%)
Strand=Plus/Minus
Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGC-GACACCGC 52384
|| || ||| | ||||| ||||| | ||||| |||||||||| || | || | |
Sbjct 26921 GTTCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATT-AGCGATGAGAAGTC 26863
Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444
| | | ||| |||| | || ||||||||| || ||||| | || || |||
Sbjct 26862 CTCCTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGC 26803
Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504
||| ||| ||||||| | | || | | || | |||||||| ||||| ||| |||
Sbjct 26802 CTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAA 26743
Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTAC----- 52559
|||| |||| || || || || || || ||||| ||||| || |||||| ||||
Sbjct 26742 CGAGCTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTACTCTCA 26683
Query 52560 ----AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCT-GAGCATGTTCAAGG 52614
|||| ||| | | | | | | ||||| ||| | || ||| ||||
Sbjct 26682 CCTCAAGAACCGCCCCAGCAAGCAGGTCATTGAGGACATCATCGTCGATGCTGT-CAAG- 26625
Query 52615 AGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCA 52674
|| || ||||||| | || | || ||||| || ||||| ||||
Sbjct 26624 -----------ATTGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCA 26576
Query 52675 TGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 52734
||||| | | ||| ||||||| |||||||| || || || || ||||| |
Sbjct 26575 TGAACTCCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCTCTTGGTTGCTC 26516
Query 52735 TCGGGCA-GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCG 52793
|||| | | ||| || || ||| || ||| || ||||| || ||| | ||||| ||
Sbjct 26515 TCGGCAATGACAAGGT-CTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCC 26457
Query 52794 CTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|| | |||||||||||||| || |||||||| || | ||| ||
Sbjct 26456 CTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTA 26413
>seq368
Length=453445
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| |||| || || || | | | |||||||| || ||||||||||||
Sbjct 426389 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 426448
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||||||| || || || | | |||| || ||||| ||||| || ||
Sbjct 426449 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 426508
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || || | |||| || | |||||||| ||||||||
Sbjct 426509 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGAAGACTCCAC 426567
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
||| | || | || ||||| || || || || || || |||||||||
Sbjct 426568 CTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATG 426616
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496252183197840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |