Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq132 120 3e-22 seq1177 116 4e-21 seq368 109 5e-19 seq996 91.5 1e-13 >seq132 Length=157463 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 126910 ATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTG 126969 ||| | ||| ||||| || || || |||||||| | || |||||| ||| || | ||| Sbjct 13298 ATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTCAAGGTGCGACCATCCTCCAACTG 13239 Query 126970 TTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTT 127029 || ||||| |||| | |||||||| |||||||| ||||||||||||||| || || Sbjct 13238 CTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTT 13179 Query 127030 CTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGG 127088 | ||||| |||| || | ||||||| | |||||| || | || | ||| || || | Sbjct 13178 CGACTTGACGTTG-TCAATCGTGTCCGAAGACTCGACCTCTAGTGTAATCGTCTTTCCAG 13120 Query 127089 TCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || || || ||||| ||||| Sbjct 13119 TCAAGGTCTTGACGAAAATTTGCAT 13095 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| || || |||||| ||| || ||||| ||||| Sbjct 13063 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTTCCG 13004 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| ||||| || || |||||||||||| ||| ||| |||| Sbjct 13003 GCGAAAATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTG 12944 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||||| || | ||| | || ||||| || || || Sbjct 12943 ACATTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTC 12884 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 12883 TTGACGAAGATCTGCAT 12867 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| ||| | Sbjct 12581 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 12522 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| ||||| ||| | |||| |||||||| || || || Sbjct 12521 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGA 12462 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| ||| || | |||||| Sbjct 12461 ATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGAGGACTCGACC 12402 Query 127067 TCGACGGTCACCGTTTTGCCGGT 127089 || | ||| | || |||||||| Sbjct 12401 TCAAGGGTGATGGTCTTGCCGGT 12379 >seq1177 Length=83355 Score = 116 bits (128), Expect = 4e-21 Identities = 339/517 (66%), Gaps = 19/517 (4%) Strand=Plus/Minus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129 |||||| | |||| |||||||| |||||| |||||| ||| | || || ||| || Sbjct 26918 CCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGAAGTGGATTAGCGATGAGAA-GTC-CT 26861 Query 47130 C--TGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCT 47187 | | ||| | ||| | | || |||||| ||| ||||| |||||||| || || Sbjct 26860 CCTTCGCCCAGCGTCTCGTTGCCTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCT 26801 Query 47188 TTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACG 47247 | || | || || | | || | || |||||||||| || || || ||||| Sbjct 26800 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTGACCTTCTCCAACG 26741 Query 47248 AGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTAC----AAC 47303 |||| ||||| | || || || || |||||| |||| ||||| ||| |||| | | Sbjct 26740 AGCTGATCTCTCGTGATGAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTACTCTCACC 26681 Query 47304 ACTAGAGTCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCG 47361 | ||| || | | ||| || | | | || ||||| | | ||| || | Sbjct 26680 TCAAGAACCGCCCCAGCAAGCAGGTCAT--------TGAG-GACATCATCGTCGATGCTG 26630 Query 47362 TCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACG 47421 || |||||| |||||| | ||||||||||||| || | | || |||||| Sbjct 26629 TCAAGATTGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACT 26570 Query 47422 CGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGT 47481 | | |||||| ||||||| || ||||| ||||||||||| | ||| || Sbjct 26569 CCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGACCGCCTCTTGGTTGCTCTCGGCA 26510 Query 47482 ATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGG 47541 || |||| | ||| | | || || || || || ||| | ||||| || || | | Sbjct 26509 ATGACAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCG 26450 Query 47542 GCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||||||||||| || |||||||| || | ||| || Sbjct 26449 GCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTA 26413 >seq368 Length=453445 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||||| || || || ||||| ||| Sbjct 426389 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 426448 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| |||||||| |||||| |||||||| || || || Sbjct 426449 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 426508 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | | ||| || Sbjct 426509 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 426568 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || || || || || || || || || ||||||||| Sbjct 426569 TCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATG 426616 >seq996 Length=339164 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| || || ||||| || || ||| ||||| Sbjct 161322 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 161381 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| ||||| || ||||||||||||||| ||| || ||||| | ||| Sbjct 161382 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 161441 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| |||||| || | ||| | || || || ||||| || || || ||| Sbjct 161442 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 161501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475491010627280