Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq132 111 1e-19 >seq132 Length=157463 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | || ||||| ||||| || ||||| ||||| || ||||| || Sbjct 13321 CCTCCACGCAGACGAAGGACAAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCACTC 13262 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| ||||| || || || || | || | || |||||||| || ||| Sbjct 13261 AAGGTGCGACCATCCTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGGA 13202 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || ||||| || |||| || | || | ||||| ||||||||||| Sbjct 13201 ATGCCCTCCTTGTCCTGAATCTTCGACTTGA-CGTTGTCAATCGTGTCCGAAGACTCGAC 13143 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||| ||| || || || | || || || ||||||||||| Sbjct 13142 CTCTAGTGTAATCGTCTTTCCAGTCAAGGTCTTGACGAAAATTTGCAT 13095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451993894384120