Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016-
04-12] 1,647 sequences; 53,491,261 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq273 273 3e-68
>seq273
Length=152475
Score = 273 bits (302), Expect = 3e-68
Identities = 1172/1832 (64%), Gaps = 43/1832 (2%)
Strand=Plus/Minus
Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585
||||||||||||| || |||| | || ||||||||||| |||||||| || |
Sbjct 73124 TGAACTGAATGGGAGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTCAGGC 73065
Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645
| |||||||| | | |||||| || | |||| | || || | ||||
Sbjct 73064 CGAGCTTCCAGCCGGCGAAATGCATGCTGGTTATCTTGCCCATGGTCGGGTCCTTCATGT 73005
Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705
| ||| | || || || ||||||||| || || || || ||||| | | |
Sbjct 73004 GAATGTTGAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGCACAA 72945
Query 115706 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 115765
|| | | ||| ||||| ||||| |||| ||| ||| | ||| || || |
Sbjct 72944 CAGTACGCTGCGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGAATGT 72885
Query 115766 CCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTCATATCCTTTG 115822
||| || ||||| || ||| || | | |||| | | |||||| | | |
Sbjct 72884 TGGGGATGTTCTGGATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGG 72828
Query 115823 ACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCAC 115882
|||| ||||| || | |||||||| || ||| |||||||| |||||||
Sbjct 72827 ACCACAGACCCATGTCGACGAGATCCTTCAAGAGCCAAGGGTTGACAACCTGGAACTCAC 72768
Query 115883 CCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942
| || || || | | | |||||||||| ||||| |||||||||||||| ||||| |
Sbjct 72767 CAGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGC 72708
Query 115943 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGAC 116002
||||||| || | ||| ||| || |||||||| || | |||||| |||||||| ||
Sbjct 72707 CCAAGATCTGCGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACAC 72648
Query 116003 CCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 116062
| | | |||| | ||||| | || |||||||| || | | || | |
Sbjct 72647 CGTGCTGCTTAATCTGCTCCTTCAAAGCATCCCAGTCCCAGAGATCCGAGGGCTTGACAT 72588
Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122
|||||| ||| |||||||||| || || || | || || ||||| | |||| || |
Sbjct 72587 TCCACATGTCATACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGG 72528
Query 116123 GGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 116179
||||||| ||| |||| | | || | | |||||| ||||| || || ||||
Sbjct 72527 GGCCCTCCTCCTTGGCCAGCTGCACCGACATGGT---GAGGGCAGCGTGGTAGATGGTCT 72471
Query 116180 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAA 116239
| || || || | | |||||| || || || | | |||| |
Sbjct 72470 CGAAGATCTTCTTGTTGAGGTCGCGAGCCTCGGGAGACTCGAAGGGCATACGGAGAGCCA 72411
Query 116240 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 116299
|| |||| || ||||| ||||||||||| || || ||||| || | ||| || |
Sbjct 72410 GGAAGGCATCAGCAAGACCCTGGACACCGAGACCGATGGGGCGGTGGCGCATGTTGCTGT 72351
Query 116300 TTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 116359
| ||||| || || || || || ||||| | || || || || | |
Sbjct 72350 TGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAA 72291
Query 116360 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTG--- 116415
| |||| |||| || || ||||| | | | || | ||| | ||| | | |
Sbjct 72290 CGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGACTCC----CTCGTTGTAGTCA 72235
Query 116416 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 116475
||| | | || ||||||| || ||||| || || |||| | |||||| | |
Sbjct 72234 ACAAAGGTGGGCAGGGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCATCAGGCGCGCAG 72175
Query 116476 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 116535
||||| ||||| ||||| || | || || || || ||||| | |||||| || ||
Sbjct 72174 TACTCGATAATCTCCGTGCAGAGGTTGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTG 72115
Query 116536 GACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGAC 116595
||| ||| ||||||||||||||||| | || | || ||||| || |||| |
Sbjct 72114 CTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCC 72055
Query 116596 TTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGG----CTCGCCCCT 116650
| ||| || || | ||| | | || | | || || ||| ||| || |||| |
Sbjct 72054 TCGAGGATGGCATACCAGAGCTTCTGAGCCTT---CA-TGGTCTTGCGACCCTTGCCCAT 71999
Query 116651 CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCT 116709
| | ||||||||| ||| | |||||||||||| || || ||| || | || ||
Sbjct 71998 C-TGCTCGTACTTCTCGTACAAGGCCTCAAACTCCTCGCCGT-AGCAGTCGGCCAGGCCA 71941
Query 116710 GGTGCCTTATCTGGA-CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 116768
|| || || ||| || | ||||| ||| | ||| || ||| |||| |||||||||
Sbjct 71940 GG-GCATTCGTTGGGGCACATGAGAGTCCAGTCCCCATTCTTCTCCACCCTCTTCATGAA 71882
Query 116769 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 116828
|||||| || |||||||| || ||| || || || |||| | || || | || ||
Sbjct 71881 GAGGTCGGGAATCCAGAGGGCGAGGAAAAGGTCACGGGCGCGAACCTCCTCCTTGCCGTG 71822
Query 116829 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 116888
|| ||||| ||||| ||||| | || ||| |||||||| || || ||||| | ||
Sbjct 71821 GTTCTTGCGCAAATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAAATGGC 71762
Query 116889 GATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATAC 116945
|| | || ||| ||| |||||| || || | || || ||| || ||
Sbjct 71761 GAAAGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGAC 71702
Query 116946 GCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTT 117005
|| ||||| || | || ||| | || || || || || |||| || | |
Sbjct 71701 ACGGAGCATAGGGACGACACCGTTGGAGGTACCGTTCGTGCCGGCAATATATGAGCCGGT 71642
Query 117006 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCA 117065
||| | || ||||| || | |||||| || || ||| ||| ||||| |||||
Sbjct 71641 GGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA 71582
Query 117066 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 117125
| |||| || | ||||| || || || ||||| |||| | ||| |||||||||
Sbjct 71581 AGTCTTGAGGGTGTCATAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCA 71522
Query 117126 GCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGA 117184
|||| || ||||| || ||||| ||||||||||| || || | ||||| |||
Sbjct 71521 AGAGGACAGCTG-GGCCTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGAGTGA 71463
Query 117185 ACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTG 117242
| | |||| |||||| | |||||| || | ||| || ||| || ||
Sbjct 71462 --AGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCA 71405
Query 117243 AATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAG 117302
||||| | | ||| ||||| | ||||| |||||| | || | | || || ||
Sbjct 71404 GATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAG 71345
Query 117303 CCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 117334
| | ||||||| ||||||| |||||||
Sbjct 71344 CTTGAGGAGGTATGATCTCTCCAAAGTCTTGA 71313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613494569420520
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