Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001618725.1_202016- 04-12] 1,647 sequences; 53,491,261 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1177 149 6e-31 seq132 123 2e-23 seq368 118 1e-21 seq996 105 7e-18 >seq1177 Length=83355 Score = 149 bits (164), Expect = 6e-31 Identities = 200/277 (72%), Gaps = 5/277 (2%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||||||||| ||| || | || ||||| | ||||||||| |||||| || Sbjct 27030 GTAGGTGTCGATGAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAA 27089 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||| || ||||| || |||||| ||||| || || ||| |||||||||| || Sbjct 27090 GCCATAGAAGCAACGGGCCTCGGGGACCTGGACCTCGCCGCTGAAGCGCTCGACCAAGTT 27149 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 || ||||| |||||||| |||||||| ||||| || | |||| |||||| | Sbjct 27150 CTCATTGACAATGCCGTCAGAAGCGGCGAAGAAGGCGAGGATGTGCGAGATGAAGTACTT 27209 Query 133347 CTCGTTGTCGTTCA----AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402 ||| | ||||| | | | | ||||||| | ||||||||||| || | ||||| Sbjct 27210 CTCATCCTCGTTGATCTTATTG-TTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCT 27268 Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || ||||||| || || ||||| || || |||||||| Sbjct 27269 CGGCGGTCCAGAAAGAGGCCTCAGCCTTCTTGTACAT 27305 >seq132 Length=157463 Score = 123 bits (136), Expect = 2e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325 |||| ||||| ||||||||| | || |||||| || |||| | | | | | | || Sbjct 12377 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGACAATGTCAAGT 12436 Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 ||| |||| ||||| ||||| |||||| | ||||| ||||| || |||| ||| || | Sbjct 12437 CAAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTGATTTTCGCCGGAA 12496 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | ||||| || |||| |||||||| ||||||||||||||| ||||| | || || | Sbjct 12497 AGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTC 12556 Query 38446 ATTTGGTGCTGCG 38458 | ||||| || || Sbjct 12557 ACTTGGTTCTCCG 12569 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38248 AAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA 38307 || || |||| || ||||| || ||||| ||||||||| | || || ||| | | || | Sbjct 12643 AACTAGTCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATA 12702 Query 38308 GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGC 38367 | | | | | || ||| || | ||||||||||| |||||| | ||||| |||| Sbjct 12703 CCATCGACAATGTCAAGTCAAAGATTCAGGACAAAGAGGGCATTCCCCCTGACCAGCAGC 12762 Query 38368 GGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCC 38427 | | || | ||| ||||| ||||| || |||| || ||||| ||| |||||||| | Sbjct 12763 GCTTGATCTTCGCAGGCAAGCAGCTTGAGGACGGACGGACCCTGTCCGATTACAACATTC 12822 Query 38428 AAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 | ||||| | || || || |||||||||||| Sbjct 12823 AGAAGGAGTCCACCCTCCACTTGGTGCTGCGT 12854 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| || || ||| | || ||||| | | Sbjct 12867 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 12926 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || ||| ||||||| Sbjct 12927 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 12986 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| || || |||||||| || | |||||||| ||||||||| Sbjct 12987 CAGCGCCTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 13046 Query 38424 ATCCAAAAGGAAGCGACGCTGCA 38446 ||||| ||||| | || ||||| Sbjct 13047 ATCCAGAAGGAGTCTACCCTGCA 13069 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || || || || || | || |||||| | | Sbjct 13095 ATGCAAATTTTCGTCAAGACCTTGACTGGAAAGACGATTACACTAGAGGTCGAGTCTTCG 13154 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || || || | ||||| ||||| ||||| ||||||| Sbjct 13155 GACACGATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCA 13213 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||| |||| || | |||||| | | || ||||| Sbjct 13214 GCAGCGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCACCTTGAGTGATTACAA 13273 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| ||||||| ||| | || || ||| || | || || Sbjct 13274 CATCCAGAAGGAGTCGACGCTTCATCTTGTCCTTCGTCTGCGTGGAGG 13321 >seq368 Length=453445 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || || |||||| | || || ||| | || Sbjct 426615 ATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 426556 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || ||| | ||||| Sbjct 426555 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 426496 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || ||||| || |||| ||||||||| |||||||||| Sbjct 426495 CAGCGCCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 426436 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || ||||| ||||| Sbjct 426435 ATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCG 426401 >seq996 Length=339164 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| | || |||||| || | |||| | Sbjct 161500 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 161441 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| ||||||| ||||| | Sbjct 161440 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 161381 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || |||| ||||||||| ||||||||||||||| ||| Sbjct 161380 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 161321 Query 38433 G 38433 | Sbjct 161320 G 161320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500162502692480